Query= MSMg01no331_o13.b1 MSMg01no331_o13.b1 CHROMAT_FILE:
MSMg01no331_o13.b1 PHD_FILE: MSMg01no331_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:53 2005
(373 letters)
>mm_chr3_141062607_141063379
Length = 773
Score = 661 bits (342), Expect = 0.0
Identities = 363/370 (98%), Gaps = 2/370 (0%)
Strand = Plus / Minus
Query: 5 ggaattcactaaactat-catcaaaatgcttaagcagtttacatgacataaatatttgaa 63
|||||||||||||| || | |||||| ||||||||||||||||||||||| |||||||||
Sbjct: 573 ggaattcactaaaccatgc-tcaaaacgcttaagcagtttacatgacatacatatttgaa 515
Query: 64 acaaatatatccaaatatataaacactgactgtctcatctttctcgtggataaatccaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 acaaatatatccaaatatataaacactgactgtctcatctttctcgtggataaatccaaa 455
Query: 124 catttaagcatttccgtggggtcagtgaaaagtcaactgtctttgttcagatgttattta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 catttaagcatttccgtggggtcagtgaaaagtcaactgtctttgttcagatgttattta 395
Query: 184 gcatatccctagatgcggaggaaatggtttcagggaatgcgtcttccttttggctaagcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gcatatccctagatgcggaggaaatggtttcagggaatgcgtcttccttttggctaagcc 335
Query: 244 tttttgtcatcgtgtaatcttttaaatatgaacacaatcctactaaggttaaatgtgtcc 303
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 334 tttttgtcatcatgtaatcttttaaatatgaacataatcctactaaggttaaatgtgtcc 275
Query: 304 actcaagcttcatccatatacatgtgtttttcttgatgagcataattttaagctgataaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 actcaagcttcatccatatacatgtgtttttcttgatgagcataattttaagctgataaa 215
Query: 364 agattctgac 373
||||||||||
Sbjct: 214 agattctgac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_o13.g1 MSMg01no331_o13.g1 CHROMAT_FILE:
MSMg01no331_o13.g1 PHD_FILE: MSMg01no331_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:53 2005
(647 letters)
>mm_chr3_140916868_140917914
Length = 1047
Score = 1193 bits (617), Expect = 0.0
Identities = 637/647 (98%), Gaps = 6/647 (0%)
Strand = Plus / Plus
Query: 1 aaatccaggcttctattattttttgcacatatacatacatacataaccacacacacacac 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 207 aaatccaggcttctattattttttgcacatatacatacatacata------cacacacac 260
Query: 61 acacagacacattaacacacacacaaagaatatagacatgtacaaacatacataagtaca 120
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 261 acacagacacattaacacacacacaaagaatatagacatatacaaacatacatatgtaca 320
Query: 121 tatatattcatacctgtgaaaagattgatattagacttgttctacagtagatatatagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatattcatacctgtgaaaagattgatattagacttgttctacagtagatatatagat 380
Query: 181 acagtaacatagaattcaacttatgatccttaatggctacaattcatactaaatatgatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagtaacatagaattcaacttatgatccttaatggctacaattcatactaaatatgatt 440
Query: 241 gccttatttctaagttttcctactgaatatttttttccatttttattaggtgtttagctc 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctttatttctaagttttcctactgaatatttttttccatttttattaggtgtttagctc 500
Query: 301 atttacatttccaatgctataccaaaagtcccccatacccacccacccccactcctctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttacatttccaatgctataccaaaagtcccccatacccacccacccccactcctctac 560
Query: 361 ccacccactccccctttttggccctggcgttcccctgtactggggcatataaagtttgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacccactccccctttttggccctggcgttcccctgtactggggcatataaagtttgca 620
Query: 421 tgtccaatgggcctctctttccagtgatggccgactaggccatcttttgatacatatgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtccaatgggcctctctttccagtgatggccgactaggccatcttttgatacatatgca 680
Query: 481 gctagagtcaagagctccggggtactggttagttcataatgttgttccacctatagggtt 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctagagtcaagagctcaggggtactggttagttcataatgttgttccacctatagggtt 740
Query: 541 gcagatccctttagctccttgggtactttttctagctcctccattgggagccctgtgatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcagatccctttagctccttgggtactttttctagctcctccattgggagccctgtgatc 800
Query: 601 catccattagctgactgtgagcatccacttctgtgtttgctaggccc 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 catccattagctgactgtgagcatccacttctgtgtttgctaggccc 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
