BAC Information

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BAC

Clone NameMSMg01-332H15
Chromosome3 (Build37)
Map Location 63,686,894 - 63,687,293
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676984, LOC666967, Mme, Plch1
Downstream geneLOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332H15.T7 (MSMg01no332_h15.b1)MSMg01-332H15.TJ (MSMg01no332_h15.g1)
ACCAG448500AG448501
length1,2821,313
length of high quality
(start - end)
404 (137 - 540)698 (135 - 832)
definitionCHROMAT_FILE: MSMg01no332_h15.b1 PHD_FILE: MSMg01no332_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:57 2005CHROMAT_FILE: MSMg01no332_h15.g1 PHD_FILE: MSMg01no332_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCGCCGACCCTTTNNNNNACAGTGGGCGCTAAGACTCCTAAGGGAGAG
GATCCGCGGAATTCTCTGAAGTCAAGGNACTCTTCCCGATCTCTTCAGAG
GAAAAANTTAACTTCCACAATTCCATAGAAACTTCCTACAAACAAAATTT
CATCTAGGGATTTTTCTGACCATGTCATTCCTGTGATGTAAGTAGAACTC
CCTTAGGATCACAAATTCTCAGTCCCAGGTATCATACAGTAGCCTTGACT
GGCCTGGCACCCAACTTAAAATACACAACTACCTCACTTATTGCATATTC
CCTTCAGCCTCTGGATGATGGCTCCATATCTACCAAGATATTTTGTTTGT
TTGTGAGGGTTTTTATTTGGGGCGGGATGTGTGTGTTATTCTCTTTGCAA
CTTCATTCATGTATAATGCATTTTAATCATACTCAACCCATTCCCCTCTT
ATCTTCCCTTCCATTCCCACTGAACCCTGTCTTTTTCCAAAGCTCTCCTC
TCTCCTCCCTCCTTCCCTTCCTCTCCCATGTGTGTGNGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCGACTCTTTTNNNNAACCATGGNAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTAAGGCCCCAATACTGA
ANGGCTGAGAAGCACCTGAACATATAATCACCCTCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTTCACCTCACACCATTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCATT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAAGTGGATATAGTACTACTGG
AGGATCCTGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACC
GGTAAGAAGGACACTTGTTCCACTATGTTCATAGCAACCTTATTTATAAT
AGCCAGAAGCTTGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATTTACACAATGGAGTACTACACAGCCATTAAAAAG
AATGAATTTATGGAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCAT
CCTCAGTGAGGTAACCCAATCACAAAGGAACTCACACAATATGTACTCAC
TGATAAGTGGATATTAGCCCAGAAACTTAGGATAACCAAGATATAAGATA
CAATTTGCTAAATGCATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGA
CACTTTGCCCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTA
CACAGAGACAAAGTTTGGAGCTGTGTCAAAAGGATGGACCATCTAGAGCC
TGCCATATCCAGGGATCCATCCCATAATCAGCTTCCAACGCTGACACCAT
TGCATATACTAGCAAGATTTTGCTGAAAGGACCCAAAATAACTGTCTCTT
GTGAAAATATGCCAGGCCCTACCAAACCCAGAAGTGGATGCTCACAGTCA
GCTATTGGATGGATCACAGGCCCCCCAATGGAGGAACTAAAAAAGGGCCC
AAGGAACCTAAAGGGATCTGCCAACCTTATAGGAAAAAAACCTTCTGTAA
CTAAACCATACCCCGGGACTCCTGGACCTACCGTGCAATGTATCAAAAAA
AGGCCCAATCCCGCCCATCTGGGAAAGAGAGGCCCTATTGGACCTGCGAA
ACTTTATTGCGCCCAAATAGAGGAAATGCCCGGCCACAAAATGGAAAAGG
GGTGGNATAAAAAAATCATCTACTCCCACCCATTACATACTTTCATTACA
ACTTACCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_h15.b1 MSMg01no332_h15.b1 CHROMAT_FILE:
MSMg01no332_h15.b1 PHD_FILE: MSMg01no332_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:57 2005
         (404 letters)



>mm_chr3_63686694_63687497
          Length = 804

 Score =  766 bits (396), Expect = 0.0
 Identities = 399/400 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacaaacaaaatttcatctagggatttttctgaccatgtcattcctgtgatgtaagtaga 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tacaaacaaaatttcatctagggatttttctgaccatgtcattcgtgtgatgtaagtaga 260

                                                                       
Query: 61  actcccttaggatcacaaattctcagtcccaggtatcatacagtagccttgactggcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcccttaggatcacaaattctcagtcccaggtatcatacagtagccttgactggcctg 320

                                                                       
Query: 121 gcacccaacttaaaatacacaactacctcacttattgcatattcccttcagcctctggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacccaacttaaaatacacaactacctcacttattgcatattcccttcagcctctggat 380

                                                                       
Query: 181 gatggctccatatctaccaagatattttgtttgtttgtgagggtttttatttggggcggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatggctccatatctaccaagatattttgtttgtttgtgagggtttttatttggggcggg 440

                                                                       
Query: 241 atgtgtgtgttattctctttgcaacttcattcatgtataatgcattttaatcatactcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgtgtgttattctctttgcaacttcattcatgtataatgcattttaatcatactcaa 500

                                                                       
Query: 301 cccattcccctcttatcttcccttccattcccactgaaccctgtctttttccaaagctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccattcccctcttatcttcccttccattcccactgaaccctgtctttttccaaagctct 560

                                                   
Query: 361 cctctctcctccctccttcccttcctctcccatgtgtgtg 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctctctcctccctccttcccttcctctcccatgtgtgtg 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)