Query= MSMg01no332_m12.b1 MSMg01no332_m12.b1 CHROMAT_FILE:
MSMg01no332_m12.b1 PHD_FILE: MSMg01no332_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:36 2005
(563 letters)
>mm_chr3_44334867_44335829
Length = 963
Score = 1089 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 1 aggttttcacttcccataaatcattttcttttttaaaagatgaataaaacatataatatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggttttcacttcccataaatcattttcttttttaaaagatgaataaaacatataatatt 260
Query: 61 ttaaatttaaagaaaaatataatttctcttctactctgaaatgaatttttataatagaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaatttaaagaaaaatataatttctcttctactctgaaatgaatttttataatagaat 320
Query: 121 agtgactttaagtccaaagaaaacattaatgaccaacatcagtaggcagccctatcagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgactttaagtccaaagaaaacattaatgaccaacatcagtaggcagccctatcagag 380
Query: 181 atattagttttccatttattattattttattattattatttgctaatccttttaaataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atattagttttccatttattattattttattattattatttgctaatccttttaaataat 440
Query: 241 agttattatgctggaatcttcatttgatagttatatactgcacctgtgatttcaaatacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttattatgctggaatcttcatttgatagttatatactgcacctgtgatttcaaatacc 500
Query: 301 atactggactctctaagtatatataagttatattttaattaattaaaaacaagtgggtaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atactggactctctaagtatatataagttatattttaattaattaaaaacaagtgggtaa 560
Query: 361 aaagaaaatattctacgaaaaaaacctaattgatttctaattatcatgcatttattttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagaaaatattctacgaaaaaaacctaattgatttctaattatcatgcatttattttat 620
Query: 421 gaaatagttttgaatataattgagttcagcctttattgatgatttacaatatttttcttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaatagttttgaatataattgagttcagcctttattgatgatttacaatatttttcttt 680
Query: 481 acttttaagacagaagaaatgactatcttctctttcgattcttataggcatgctgctatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttttaagacagaagaaatgactatcttctctttcgattcttataggcatgctgctatt 740
Query: 541 gatttgcccattttctggctgac 563
|||||||||||||||||||||||
Sbjct: 741 gatttgcccattttctggctgac 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_m12.g1 MSMg01no332_m12.g1 CHROMAT_FILE:
MSMg01no332_m12.g1 PHD_FILE: MSMg01no332_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:36 2005
(654 letters)
>mm_chr3_44512299_44513352
Length = 1054
Score = 1197 bits (619), Expect = 0.0
Identities = 640/653 (98%), Gaps = 12/653 (1%)
Strand = Plus / Minus
Query: 8 ctctgactctgtgaataataatgtctggctgtgagtctctatatttgtccacatctgctg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 ctctgactctgtgaataataatgtctggctgtgagtctctatatttgtccacatctgctg 995
Query: 68 ctggaggaagcttctattatgacgactgagtaaggcacacatttatgaagatagcagaac 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 ctggaggaagcttctattatgacgactgagtaaggcacacatttatgaagatagcagaac 935
Query: 128 atcactaggagtcattgtattgctatgttcactttgcaggaagagaagtatttgcttttc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 atcactaggagtcattgtattgctatgttcactttgcaggaagagaagtatttgcttttc 875
Query: 188 tctaaggcccctggcttatcactagataggattccaggagagattctctgaacatttgat 247
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 874 tctaaggcccctggcttatcactagataggatcccaggagagattctctgaacatttgat 815
Query: 248 tagatggaatttgaggagaggtaaaat---gttttttt---acttttaatattgttcctc 301
||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct: 814 tagatggaatttgaggagaggtaaaatgagg------taaaacttttaatattgttcctc 761
Query: 302 aggcttatgacacttttacatgtgtttcccacaacagtagcctagcactccagaatatat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aggcttatgacacttttacatgtgtttcccacaacagtagcctagcactccagaatatat 701
Query: 362 gtcttttgtgtgctttacatatactgaaaatacagaatttcttagaataacagatgaaag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gtcttttgtgtgctttacatatactgaaaatacagaatttcttagaataacagatgaaag 641
Query: 422 agtctctgctagaacacttaattagaaaaatgagaagagaagaaaaatattaaaacaaaa 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 agtctctgctagaacacttaattagaaaaatgagaagagaagaaaaatattaaaacaaaa 581
Query: 482 caaaacaaattattcctcagatggaaaaaaagagctttcaccataggctgtaacatgtgt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 caaaacaaattattcctcagatggaaaaaaagagctttcaccataggctgtaacatgtgt 521
Query: 542 tccaaaagctatggtgtggtggacctgttccttgtgtaaaatcaatccatctgagaatga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tccaaaagctatggtgtggtggacctgttccttgtgtaaaatcaatccatctgagaatga 461
Query: 602 cagccaaatcatggttttccaaaagctccattctaagttttttgatcacacta 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cagccaaatcatggttttccaaaagctccattctaagttttttgatcacacta 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
