Query= MSMg01no332_n19.b1 MSMg01no332_n19.b1 CHROMAT_FILE:
MSMg01no332_n19.b1 PHD_FILE: MSMg01no332_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:46 2005
(520 letters)
>mm_chr3_27821798_27822717
Length = 920
Score = 963 bits (498), Expect = 0.0
Identities = 513/520 (98%), Gaps = 4/520 (0%)
Strand = Plus / Plus
Query: 1 aggcagttttgatcagtgtagtagttagagatggttattagaggtgttcacttaaagatg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 aggcagttttgatcagtgtagtagttagagatggttattacaggtgttcacttaaagatg 260
Query: 61 gggctgcatatagatatggcatggccttgcacaaggaagagccgatgcttatctccttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggctgcatatagatatggcatggccttgcacaaggaagagccgatgcttatctccttca 320
Query: 121 agaaaaaacaaacaaacaaacaaaccttagttttgaatccagaatctaattttgcttttt 180
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaa----aaacaaacaaacaaaccttagttttgaatccagaatctaattttgcttttt 376
Query: 181 atataagctcaaaatattgtttgtatatgtttataagtattacatttttttcctgagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atataagctcaaaatattgtttgtatatgtttataagtattacatttttttcctgagaaa 436
Query: 241 ttaaagtagtgcataaatttagagatgcttttttttaaatctgattgagagttgctcacc 300
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 437 ttagagtagtgcataaatttagagatgctttttttaaaatctgattgagagttgctcacc 496
Query: 301 accacgccttatttattcagaagttacaattgttcataatccacttagcagcttaacaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 accacgccttatttattcagaagttacaattgttcataatccacttagcagcttaacaat 556
Query: 361 gcctacattccggagctcttgactctagctgcatatgtatcaaaagatggcctagtcggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gcctacattccggagctcttgactctagctgcatatgtatcaaaagatggcctagtcggc 616
Query: 421 catcactggaaagagaggcccattggacacgcaaactttatatgccccagtacaggggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 catcactggaaagagaggcccattggacacgcaaactttatatgccccagtacaggggaa 676
Query: 481 cgccagggccaaagagggggagtgggtgggtaggggagta 520
||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cgccagggccaaagagggggagtgggtgggtaggggagta 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_n19.g1 MSMg01no332_n19.g1 CHROMAT_FILE:
MSMg01no332_n19.g1 PHD_FILE: MSMg01no332_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:46 2005
(741 letters)
>mm_chr3_27991584_27992724
Length = 1141
Score = 1305 bits (675), Expect = 0.0
Identities = 705/715 (98%)
Strand = Plus / Minus
Query: 4 tccccctttggattccctggaaaatgagaggtggtagaactattgtctcccatatccaag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tccccctttggattccctggaaaatgagaggtggtagaactattgtctcccatatccaag 656
Query: 64 gacctgggttcaatccccagtgtttcacggaatgagacaagcaaatggaaaaatcagaac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gacctgggttcaatccccagtgtttcacggaatgagacaagcaaatggaaaaatcagaac 596
Query: 124 tggcctagatccctgctttcagcctttaagcaataaacagccacagttctgggaaaagat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tggcctagatccctgctttcagcctttaagcaataaacagccacagttctgggaaaagat 536
Query: 184 ttagagatgaatgtttatagaaaagcaagaggtgaagggtggagtaacccggatgggaac 243
||||||||||||| ||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct: 535 ttagagatgaatgcttataaaaaaacaagaggtgaagggtggagtaacacggatgggaac 476
Query: 244 ggaaggacagaaatgaagccaggggagatttctgaagtgtctgtttatctagactgtctt 303
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 475 ggaaggacagaaatgaagccaggggagatttctgaagtgtctgcttatctagactgtctt 416
Query: 304 ttctccagtactacagatatggcagctgaaaacctgaacaactccagatttctcaaggcc 363
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttctccagtactacagttatggcagctgaaaacctgaacaactccagatttctcaaggcc 356
Query: 364 ttgggcttttttagttggacaaaggtccctataagaaaaataatgcaaaaattacaaaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ttgggcttttttagttggacaaaggtccctataagaaaaataatgcaaaaattacaaaat 296
Query: 424 taaatatatgactttttgagaaagggtcttgtatatcccagcctagccttgagcttacta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 taaatatatgactttttgagaaagggtcttgtatatcccagcctagccttgagcttacta 236
Query: 484 tgtagccaaggataaccttgcatttcctatcttcctgtctcccccacctgacttcagaga 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tgtagccaaggataaccttgcatttcctatcttcctgtctcccccacctgacttcagagg 176
Query: 544 ttacagcttgtcctgacacagtgggtttatggcatgctgagaagcaaacccagagcttca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ttacagcttgtcctgacacagtgggtttatggcatgctgagaagcaaacccagagcttca 116
Query: 604 gacacactgggcatagccctagccctgggcacaagtgttgagaaaggatgagcagtgagt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 115 gacacactgggcatagccctagccctgggcacaagtgttgagaaaggatgagccctgagt 56
Query: 664 cgtcctaacccaaaggcagggcccagagctgacactgagtgtgggctctttacag 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 tgtcctaacccaaaggcagggcccagagctgacactgagtgtgggctctttacag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 741
Length of database: 1141
Length adjustment: 10
Effective length of query: 731
Effective length of database: 1131
Effective search space: 826761
Effective search space used: 826761
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
