BAC Information

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BAC

Clone NameMSMg01-332O12
Chromosome3 (Build37)
Map Location 9,896,440 - 9,896,796
singlet/doubletsinglet
Overlap geneLOC621504
Upstream geneMrps28, Tpd52, LOC100041389, LOC667886, Zbtb10, Zfp704, Pag1
Downstream geneFabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332O12.T7 (MSMg01no332_o12.b1)MSMg01-332O12.TJ (MSMg01no332_o12.g1)
ACCAG448810AG448811
length1,2621,262
length of high quality
(start - end)
---362 (418 - 779)
definitionCHROMAT_FILE: MSMg01no332_o12.b1 PHD_FILE: MSMg01no332_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:52 2005CHROMAT_FILE: MSMg01no332_o12.g1 PHD_FILE: MSMg01no332_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGCCGACTAGTGNNNATCATTGGCGCATAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCCAGTCAGAGAGAGCTCTAACAACCTCCTTAACNNNGGN
ATCCTGATCCAAGGAATTAAAAAGGCAGGGGNGAAAGAGAGATGAAATTT
GGTTGCCCTCAGGTATGAGAGCCCAGCAGACAGACGGACATAGCTGCGGG
TTATTAAAAACACAGCAACAAATGGAGTATTTGAATGTAAGAGACCATGG
ATAGAATCATATGGAGCTATGAGCACTATGTTATCAGATTGTAATGCCGT
AAAAGATAGCGACCAGAGGCTGAAGGGAAGGAGGCTTATAGACTTAGGAA
ATCGTAGAACAGAGTAATGATAAGAACTACTATTATATCGTATGATGTAA
ATACAGTATTGTTTATAACATAAGTATATAAAGGTTCATAAATATATAAA
TAAGATATAACGATTATTATTATAAAATTTGTATATTTAGTGATTGATTT
GTCTCTGGACAGGGTTACTCTATGCAACCCTGGCTGTCCTGAAATGTCGT
TCTCTGTACCCTAAGGTGGCCTCCAACTGACAAATCCATCTGCCTCTGAC
TCACAGCACTGAGGAGTAAAGGTGAGCACCGACACTGCCTGGAGCAAGAG
AATTATTTTGAATAGTGCCAGATGTGTTCAGAGGAATTCACACAGGCGAT
TTATATGAATGTGCTTGACTTAAGGCTCTTTCCAGGTGCGGAGAACCCAT
AGACTATATTTGTCTCACCACAAGATGAAAAGCATGACGATATGACAGCT
CCTAGGGATGGTGGAAGACACGCTTATTGTACGAAGGCTATAATACAGTA
CGAGAGGAATCTGATAAGGGCCAGACTGAACCATACGATGAATAAAGGCT
GGTAGGGGGCACCCGGAAAAGAAAAAAAAAAGAAGGGATGTAGAGGGGGC
TGGGAACCCTAAACGAGGGGCAAAAAGGGTACCTAAAATACAACCAGTGG
GGCAGCCCCCTGGGGGGTCGAAATCTTCTCGGGGAGGGAGTTTTAGTTCC
TAGGCACACACTCTTTAAAGTGGTTTTTTTGTAGNCCNAAAAATTCCCAA
AAAAAGTTGGGGGGCTTCCTCTTCTCCCCCCGGCGCAGGGAAACAAGCCA
GTGGGTTTCCTGGGGTGGAAATCCCCCCCCCTCTATCAAGGAAATGACTC
NGGAAAAAATGGGGAATAGGGAAAAGANTCCCANNTTTTTCTANGTCGGC
GGTTTAAACGTA
NCCGTCCTTTTTTNAAAAGATGTGAGNCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAACCCTGTNGAGTTA
AGNACAACTTTGGAAAATTCCCTTAATTTGCCAAGGGAAGGCACACATGA
AGAGGGTGACTAATCACAGACAAGGGCTGGCTTTTGCCATGAAGACTCAA
TAGATAGGTGATAATAACATTTTCTTAAGCATGAAAATAGCAGAATGTTA
GAGAATTCTCTTTTAAAATTGACATTGTATGTGTGTGTGTGTTATATGTG
TTGTGTGCATCTTCATGTGGGCGTGCCTGTGTATACATGTGAGTGGGAAT
ACACACGTGTGTGTGCTGAAGGTTGCTCTCTTCATGGCTTTCTGAGACAG
GGATCCCATACTGATACAGCAGCTGGTTGTTTGCCTAGGTCAGCTGTTCT
TAGAGCTGGGAGCCTGCTGTCTTCCTTCGCCTCTCTAGCACTGTGACTAT
AGTCATACACTCCCTCACTCAGGAGTGGGGGTGAGTGAGTGTTGGGCAAC
CAAACTCAGATCTTCACCCTGCACTGCAAGCATTTTTCTGGCTAAGTCAT
CTCCCCATCACTTGAGCGGTAGATGGCATCCTGGAGAGAAGCAAGTCTTA
GTCTTGGGTAGAAGGCTTTGAGAAGTGCTCGCTTATTGTCTTAAATGCAT
GCCTTCATAGTAGAATTTAATTATTTTTGATAAACCAATTAACATGTTAT
CTTCTCAATCTGACCACAATCTGAGGTCATGTCTGCTTCCTCATAGTCTC
TTCTGAGTTTGTCCCCATGCAGTTTTCCAGCCCTTAAAGACTTTCTATTA
TAGACCGGAACAAGATGGTGTCCACTATAGGCTACGAGGGTGGTCCGGGT
AGGGTAGAACAACTACGACACTGTCCCTACCGCTGATAGGATGCCTTTGC
GTCTGCTTGAATCCCCTGCTTACAAATTCCACGGTCCTTTAAAAAAGGGT
TAATAACCTCTTACTGGGCTTTCTATGCTTTCGCCCATATGCTCCCCAAT
ACCCTTTCCTCCGGCCCCAGCGGGTCCTAATCACGAACCCCCCCTTCGGT
CTATCCAACCTTTGTCCCTCGATAAACTCCTCCTTAATAGAGCCTCCCCC
TTCACCTCCCCCCTAAACTCTGCCTCCCCTCTATAGTCCTACTCTCTCTC
TTTTCTTTCATCAAACCTCTCCCTTCATCCCGGCCCACCACTTATATCTC
CTACTCTCTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_o12.g1 MSMg01no332_o12.g1 CHROMAT_FILE:
MSMg01no332_o12.g1 PHD_FILE: MSMg01no332_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:52 2005
         (362 letters)



>mm_chr3_9896240_9896996
          Length = 757

 Score =  607 bits (314), Expect = e-178
 Identities = 348/362 (96%), Gaps = 5/362 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagctggttgtttgcctaggtcagctgttcttagagctgggagcctgctgtcttcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagctggttgtttgcctaggtcagctgttcttagagctgggagcctgctgtcttcctt 260

                                                                       
Query: 61  cgcctctctagcactgtgactatagtcatacactccctcactcaggagtgggggtgagtg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 cgcctctctagcactgtgactatagtcgtacactccctcactcaggagtgggggtgagtg 320

                                                                       
Query: 121 agtgttgggcaaccaaactcagatcttcaccctgcactgcaagcatttttctggctaagt 180
           ||||||||| |||     ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 agtgttggggaac-----tcagatcttcaccctgcactgcaagtatttttctggctaagt 375

                                                                       
Query: 181 catctccccatcacttgagcggtagatggcatcctggagagaagcaagtcttagtcttgg 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 376 catctccccatcacttgagcggtagatggcattctggagagaagcaagtcttagtcttgg 435

                                                                       
Query: 241 gtagaaggctttgagaagtgctcgcttattgtcttaaatgcatgccttcatagtagaatt 300
           |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 436 gtagaaggctttgagaagtgcttgcctattgtcttaaatgcatgccttcatagtagaatt 495

                                                                       
Query: 301 taattatttttgataaaccaattaacatgttatcttctcaatctgaccacaatctgaggt 360
            ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 496 caattatttttgttaaaccaattaacatgttatcttctcaacctgaccacaatctgaggt 555

             
Query: 361 ca 362
           ||
Sbjct: 556 ca 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 757
Length adjustment: 9
Effective length of query: 353
Effective length of database: 748
Effective search space:   264044
Effective search space used:   264044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)