BAC Information

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BAC

Clone NameMSMg01-332P22
Chromosome3 (Build37)
Map Location 67,318,162 - 67,481,693
singlet/doubletdoublet
Overlap geneRarres1, Mfsd1, LOC667207, Gm412
Upstream geneLOC625115, Shox2, Rsrc1, Mlf1, Gfm1, Lxn
Downstream geneEG208426, EG545531, LOC631379, Schip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332P22.T7 (MSMg01no332_p22.b1)MSMg01-332P22.TJ (MSMg01no332_p22.g1)
ACCAG448871AG448872
length1,2421,257
length of high quality
(start - end)		508 (138 - 645)660 (129 - 788)
definitionCHROMAT_FILE: MSMg01no332_p22.b1 PHD_FILE: MSMg01no332_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:03 2005CHROMAT_FILE: MSMg01no332_p22.g1 PHD_FILE: MSMg01no332_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,481,186 - 67,481,693)(67,318,162 - 67,318,821)
sequence
NNNGGCGGCTTTNNNNNAAATATTGGGCGCTATAXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCTCCTTAGGGCTATTACTAACATAACCCGCCAAG
NCNGNGAANGCTGGNTTGGTTAACGTTTGAACCCTCGCTACTGACACTAT
TTAGGGGAGATGTAGAAACTTTTAGACAGGAGACCTGGCAGAAGTATGTC
ACTGGGTGTGTCTTTTGGAATGTCTTGTCCTTGACTGTCTACCATACACT
GAGGAACTACTCACACTGTACCCAGCATCAGTTGCTCACCCACATGAAGC
CAAGCAAGCACGGAGTGAACTTCTGACTCTATTAGCTAAAATAAAGAGTT
CTTCCAAGTATTTTGACCACACTAATGAGAAAAGTAAGTAATACACCACT
TAAAATTGTATTGTCTAATTTCACTTGATAACTACAATCTATGTACTTGG
TACAAATGCCAGACTCTGTGGAAGATACAAGAGAAAGAGCATCCTCCAAA
GAGGCTAAAAAGGATTAAGAGAGAAAACAGAGCAATGTGTTGATGACCCT
AGCCAGCCTAGCTCATACTCCTCTAGATAACAGTCATGGGCCACATAGAG
GAAAACAAAACGGAGCAGGAAAACAAAGCAGACAGTTGCAACATCAAGAT
TCAACCATGCCTAAAGTTAGACTGGCCTATGAACTTTCCAGTTACATGAA
TCAATAGATCTCCTTTTAGCTTGTCAGGGTTTGAATTGGGATTCCTGGTA
GNTTCCACTCTGAGTCCTGACTGACAGCACATACCTTTCCCCCCAGGACT
GAAAGCATCAAAAGGGGAGGTACCCTTCCTTGTGTGGGCCTACCTGACCC
CGGGGAAAAGATTTTTATGGATTCTGGGGAGCCCGGGGGCCCTTTTTTTT
TTTCCTTTCCAAAATTTTAACCCTATTTGGAAGGAGGCTTTTCTCTTCAT
AAAACGGGCCACTCCCCCTTGGAAAAACATTTCTTGTTGGCTTTTCAATA
TAAAAAAAAGAGGGATTGGAGTGGCTTCTCCCGGGGGGTTTTAAAAAAAA
TGTTCTTTAACCCCTCTTGATGTTGGCTCTCTCTGAAACCCTTTGAAAAT
AAAAATGTATCTTTNTTAATATTCTACTTTCTAAACTCATTCGTATTCTT
TTACTTCTCAANACACTCCTTACTNCNACTTACCCATCCNTCCTTATCTT
CACCCTCCCCCTCATTCCATCCTCTCCTAANATTCTGTTCTA

CGGTTCTCTNNNNAAATGCATGGAGGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTATAACCCCACCCCCCAATA
ACGAGGGAGGTTGTCATCACTTTCTCCTCTTTCCTCAAAGAAGAGGACAA
GATCTTAAGTTGTGACTTCATTTCTCCGGTGAACTAGTAAAGGCTGGATG
GAGCCTGGAGTAGAGACTGTCCCTGAGACAGTAAAGATTGTTTTGCTGTT
GCTGTTTATTTAACAATCACAGTACTTTGCCTTTTTCTAGAAATAAGGAA
ATAAGGCTGAGAGTCACGAAGGTGATTCACATCATCTGATGCTACACGGA
GGATGGTCTTTATCATCACACCAATTTAAATCTTATGCTCCACTCTACAG
AAGATGCAAGGTTGCGGATCTGTGGCTTTGTGGAACACCCCGGGAGCCTC
ATTGCCTCGGGATTCCGCAGTTGTGTAACTTTAAAAATCTGTTTAATGAA
GAGAGCAACACATCTACAGCCACTGTCCGGAAATCAGCAAGCGATCTAGG
AGCTGAAAAGTTTCGATCGCCCTTTCAGTTATGCAGAAGACGGCGGCCCT
GTCACTCCCTAGTTAGATTAAGAAGACACCAGAACTGAATGGTCCCTGGT
CAGACCCCTGAGTAACCTTTACCACTTTATCCCAAAGCCTTGCACTGGTG
GCCTGCCATGAACAACGAAACTCTAGAAACGTGTCTGCGATGCAGAGAGC
TGGCTTAGCTTTTGTACACACACACCTCCCCTACTTTGGTAGGAGCCATA
GAGTCTAAGCCATGGGTAGACTGGGTACACAGTGCGCATGCCAACACCCA
CACTGGGTACCCCGACCAGGGGCTTCATGGGACCTTTTTTCTTAGGTTCT
CAAAACGCTTAAGTATTTCTGGCCTCAAAATACCGGAAAGGCAAAGGCAG
CGTTGGAAGGTTCCGCGCCTCTCGTGCGAAAAAACTTAAGGCTGGGAACG
CTGGGGGCCCCCAAGCGGGGCCCGGCCCGGTCGGGGTTTATTTTCCCCAG
CGGGGGCCTTTCTTGTTCCGGGGTCCTACACCCCTATGGGCCTTGTGTAA
ATCCCCCCCCGAAAATTATAAAAAATTGAGGGTCATCGTTGCCCCCCCCC
TTGGGAGGAACCCCCGTGTGGGATCACCATCCCCCCCTATGTTCTCGAGT
ATACTTTTGTGATACTCTCTCTTCGCGCTCCTTGTGCATTAACTTACTCT
CCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_p22.b1 MSMg01no332_p22.b1 CHROMAT_FILE:
MSMg01no332_p22.b1 PHD_FILE: MSMg01no332_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:03 2005
         (508 letters)



>mm_chr3_67480986_67481893
          Length = 908

 Score =  967 bits (500), Expect = 0.0
 Identities = 506/508 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctactgacactatttaggggagatgtagaaacttttagacaggagacctggcagaagtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ctactgacactatttaggggagatgtagaaacttttagacaggagacctggcagaagtat 649

                                                                       
Query: 61  gtcactgggtgtgtcttttggaatgtcttgtccttgactgtctaccatacactgaggaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gtcactgggtgtgtcttttggaatgtcttgtccttgactgtctaccatacactgaggaac 589

                                                                       
Query: 121 tactcacactgtacccagcatcagttgctcacccacatgaagccaagcaagcacggagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tactcacactgtacccagcatcagttgctcacccacatgaagccaagcaagcacggagtg 529

                                                                       
Query: 181 aacttctgactctattagctaaaataaagagttcttccaagtattttgaccacactaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aacttctgactctattagctaaaataaagagttcttccaagtattttgaccacactaatg 469

                                                                       
Query: 241 agaaaagtaagtaatacaccacttaaaattgtattgtctaatttcacttgataactacaa 300
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 468 agaaaagtaagtaatacaccacttaaaattgtattgtctaaatacacttgataactacaa 409

                                                                       
Query: 301 tctatgtacttggtacaaatgccagactctgtggaagatacaagagaaagagcatcctcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tctatgtacttggtacaaatgccagactctgtggaagatacaagagaaagagcatcctcc 349

                                                                       
Query: 361 aaagaggctaaaaaggattaagagagaaaacagagcaatgtgttgatgaccctagccagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aaagaggctaaaaaggattaagagagaaaacagagcaatgtgttgatgaccctagccagc 289

                                                                       
Query: 421 ctagctcatactcctctagataacagtcatgggccacatagaggaaaacaaaacggagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctagctcatactcctctagataacagtcatgggccacatagaggaaaacaaaacggagca 229

                                       
Query: 481 ggaaaacaaagcagacagttgcaacatc 508
           ||||||||||||||||||||||||||||
Sbjct: 228 ggaaaacaaagcagacagttgcaacatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no332_p22.g1 MSMg01no332_p22.g1 CHROMAT_FILE:
MSMg01no332_p22.g1 PHD_FILE: MSMg01no332_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:03 2005
         (660 letters)



>mm_chr3_67317962_67319021
          Length = 1060

 Score = 1222 bits (632), Expect = 0.0
 Identities = 653/660 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttcctcaaagaagaggacaagatcttaagttgtgacttcatttctccggtgaactagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttcctcaaagaagaggacaagatcttaagttgtgacttcatttctccggtgaactagt 260

                                                                       
Query: 61  aaaggctggatggagcctggagtagagactgtccctgagacagtaaagattgttttgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggctggatggagcctggagtagagactgtccctgagacagtaaagattgttttgctg 320

                                                                       
Query: 121 ttgctgtttatttaacaatcacagtactttgcctttttctagaaataaggaaataaggct 180
           ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ttgctgtttatttaacactcacagtagtttgcctttttctagaaataaggaaataaggct 380

                                                                       
Query: 181 gagagtcacgaaggtgattcacatcatctgatgctacacggaggatggtctttatcatca 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagttacgaaggtgattcacatcatctgatgctacacggaggatggtctttatcatca 440

                                                                       
Query: 241 caccaatttaaatcttatgctccactctacagaagatgcaaggttgcggatctgtggctt 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 caccaatttaaatcttatgctccactctacagaagatgcaaggctgcggatctgtggctt 500

                                                                       
Query: 301 tgtggaacaccccgggagcctcattgcctcgggattccgcagttgtgtaactttaaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtggaacaccccgggagcctcattgcctcgggattccgcagttgtgtaactttaaaaat 560

                                                                       
Query: 361 ctgtttaatgaagagagcaacacatctacagccactgtccggaaatcagcaagcgatcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtttaatgaagagagcaacacatctacagccactgtccggaaatcagcaagcgatcta 620

                                                                       
Query: 421 ggagctgaaaagtttcgatcgccctttcagttatgcagaagacggcggccctgtcactcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggagctgaaaagtttcgatcgccctttcagttatgcagaagacggcggccctgtcactcc 680

                                                                       
Query: 481 ctagttagattaagaagacaccagaactgaatggtccctggtcagacccctgagtaacct 540
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctagttagattaagaagataccagaactgaatggtccctggtcagacccctgagtaacct 740

                                                                       
Query: 541 ttaccactttatcccaaagccttgcactggtggcctgccatgaacaacgaaactctagaa 600
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaccactttatcccgaagccttgcactggtggcctgccatgaacaacgaaactctagaa 800

                                                                       
Query: 601 acgtgtctgcgatgcagagagctggcttagcttttgtacacacacacctcccctactttg 660
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acgtgtctgcgatgtagagagctggcttagcttttgtacacacacacctcccctactttg 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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