Query= MSMg01no333_e06.b1 MSMg01no333_e06.b1 CHROMAT_FILE:
MSMg01no333_e06.b1 PHD_FILE: MSMg01no333_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:24 2005
(373 letters)
>mm_chr3_78536256_78537028
Length = 773
Score = 690 bits (357), Expect = 0.0
Identities = 363/365 (99%), Gaps = 1/365 (0%)
Strand = Plus / Plus
Query: 7 attctcaggtcttcctcgtaccatgcttgcctgaacactgctgtactcccatcttgatga 66
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 208 attctcaggtcttcct-gtaccatgcttgcctgaacactgctgtgctcccatcttgatga 266
Query: 67 taatggactgaacctctgaacctgtaagccagcctcaattaaatgtccttataagatttg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 taatggactgaacctctgaacctgtaagccagcctcaattaaatgtccttataagatttg 326
Query: 127 ccttggtcggggtgtctgttcacagcagtaaagccctaactaagacaccatgacaacact 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ccttggtcggggtgtctgttcacagcagtaaagccctaactaagacaccatgacaacact 386
Query: 187 cacaatgcttgcacggatgcaaaccatacaatgcaccactgagaatgggaagtagacaca 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cacaatgcttgcacggatgcaaaccatacaatgcaccactgagaatgggaagtagacaca 446
Query: 247 gaggccctctcctaacaaagaattacagttaatatctgctgggaaagagaagagctgtaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaggccctctcctaacaaagaattacagttaatatctgctgggaaagagaagagctgtaa 506
Query: 307 gggtgggaaataataaaaaattaaaaagaaatcaagtctgtggattgatcccctcccctg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gggtgggaaataataaaaaattaaaaagaaatcaagtctgtggattgatcccctcccctg 566
Query: 367 cctgg 371
|||||
Sbjct: 567 cctgg 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_e06.g1 MSMg01no333_e06.g1 CHROMAT_FILE:
MSMg01no333_e06.g1 PHD_FILE: MSMg01no333_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:24 2005
(583 letters)
>mm_chr3_78714493_78715475
Length = 983
Score = 996 bits (515), Expect = 0.0
Identities = 568/587 (96%), Gaps = 5/587 (0%)
Strand = Plus / Minus
Query: 1 actatgtaccccaggctggccatggacttgaaatccatcttgagccttatacctaagtgc 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 actatgtaccccaggctgtccatggacttgaaatccatcttgagccttatacctaagtgc 761
Query: 61 tgagatcactggtgtgatacctagcacttagcttgtttttctgccctctttctctgctat 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 760 tgagatcgctggtgtgatacctagcacttagcttgtttttctgccctctttctgtgctat 701
Query: 121 gtaatgccatatagtttatccacattgctgtaaataacagaaaagatttcatcctttttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gtaatgccatatagtttatccacattgctgtaaataacagaaaagatttcatcctttttg 641
Query: 181 atgccaaagtgatactcctttgtgcacgtaccacattaaaatattcttcatagag---tc 237
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 640 atgccaaagtgatactcctttgtgcacataccacattaaaatattcttcatagagtcttc 581
Query: 238 ttctcctggtccttagccaaggcctatgtaacttattgaatggacaacatcttccccatc 297
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 580 ttctcctggtccttagccacggcctatgtaacttattggatggacaacatcttccccatc 521
Query: 298 attgcctgtgttgaggttgctctcattttgctagcctctgagcatatccccacgcgatca 357
|||||||||||||||||||||||||||||| ||||||||||||||||| | | |||||
Sbjct: 520 attgcctgtgttgaggttgctctcattttgttagcctctgagcatatctttatgtgatca 461
Query: 358 gtgagctagtgtgatcagtgtgctatggtttgaatgtcctctccaaagttcatgttgaaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gtgagctagtgtgatcagtgtgctatggtttgaatgtcctctccaaagttcatgttgaaa 401
Query: 418 tctgaatgacacttttgagatatgcacacttgctctcaggagtggcttaatgctattatt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tctgaatgacacttttgagatatgcacacttgctctcaggagtggcttaatgctattatt 341
Query: 478 atgggattgtattgactctcacaggaatgatgtgttgtataaagtgactacttttgccat 537
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 340 atgggattgtattgactctcacaggagtgatgtgttgtataaagtgactacttttgccat 281
Query: 538 gtcatgcccttcaccatgcttt-gtctcagtaactaggccctgacca 583
|||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct: 280 gtcatgccctccaccatgctttggt-tcagtaactaggccctgacca 235
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
