Query= MSMg01no333_e08.b1 MSMg01no333_e08.b1 CHROMAT_FILE:
MSMg01no333_e08.b1 PHD_FILE: MSMg01no333_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:24 2005
(642 letters)
>mm_chr3_132367418_132368463
Length = 1046
Score = 984 bits (509), Expect = 0.0
Identities = 563/583 (96%), Gaps = 8/583 (1%)
Strand = Plus / Plus
Query: 63 aaaaaaaccagtgattccatctaatcgttactattgcctcaatatttataattcttttaa 122
||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 263 aaaaaaa-cagtgattccatctaatcttta-tattgcctcaatatttataattcttttaa 320
Query: 123 aatatactttttgtggttgctttcagatactaattttaaaaaataaaac--ggctagaaa 180
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 321 aatatactttttgtggttgctttcagatattaattttaaaaaataaaacatggctagaaa 380
Query: 181 aaaaccctc--attaaaatattaacactgataatattagaaggttggattgaatga--tt 236
||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 381 aaaaccctcatattaaaatattaacactgataatattggaaggttggattgaatgatttt 440
Query: 237 tttttttttgttcttctcggtatatactaaagaaactcagggacaaacagggtgagagag 296
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tttttttttgttcttctcagtatatattaaagaaactcagggacaaacagggtgagagag 500
Query: 297 gtgggagaaatgatgaggaaaatgggcgtctctatgaaacttgacatagagagggtggag 356
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 gtgggagaaatgatgaggaaaatgggcgtctctatgagacttgacatagagagggtggag 560
Query: 357 aagatttaaaacgtgtttgataagtcatgaactactggaatgattcacaaggtgatatgg 416
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagatttaaaacgtgtttggtaagtcatgaactactggaatgattcacaaggtgatatgg 620
Query: 417 aaatatataatgtctatatagtataaaatacatcatattttcatggacttagttgttttg 476
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 aaatatataatgtctatatagtataaactacatcatattttcatggacttagttgttttg 680
Query: 477 tttttgtttgtacagagtacatggcttttattgatttgtcctaaacgttttaaaataaac 536
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 681 tttttgtttgtacagagtacatggcttttattgatttgtcccaaatgttttaaaataaac 740
Query: 537 tggtaatttgttaaaacaccaagcccgtgagtggcaagtgcatctcattttgctataaat 596
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 741 tggtaatttgttaaaacaccaagcccgtgagtggcaagtgcatctcgttttgctataaat 800
Query: 597 cacccaaacttcaagtctttcccagggaaaacaaagacttttt 639
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 801 cacccaaacttcaagtctttcccagggaagacaaagacttttt 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1046
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1036
Effective search space: 654752
Effective search space used: 654752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_e08.g1 MSMg01no333_e08.g1 CHROMAT_FILE:
MSMg01no333_e08.g1 PHD_FILE: MSMg01no333_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:25 2005
(631 letters)
>mm_chr3_132526123_132527153
Length = 1031
Score = 965 bits (499), Expect = 0.0
Identities = 526/535 (98%)
Strand = Plus / Minus
Query: 97 cacaatcttccatggctggcaacaaaagcatcatggggaatccacccacgattaatgagc 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 cacaatcttccatggctggcaacaaaagcatcatggggaatccacccacgattaatgagc 972
Query: 157 ttgcacttgtgccagacatggcgactccgtgcgtgttactttgtcctcacacaaccccag 216
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 971 ttgcacttgtgccagacatggcgactccgtgcgtgttacttcgtcctcacacaaccccag 912
Query: 217 tcagataccattttcccacttgattgcaaaaggaggctcagaggccagggaaggttgaga 276
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 tcagataccattgtcccacttgattgcaaaaggaggctcagaggccagggaaggttgaga 852
Query: 277 aacctgcgtaggttacaaaggcgctgaggagctgttcctgtttgtgtaaaggcagacctt 336
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 aacctgcgtaggttacacaggcgctgaggagctgttcctgtttgtgtaaaggcagacctt 792
Query: 337 ctggctgcagggctgctcctcgcacgtttccactggaatatcaggtagcacgtgggattg 396
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 791 ctggctgcagggctgctcctcgcacgtttccactggaatatcagggcgcacgtgggattg 732
Query: 397 cttgggtgatacatctgtctgggagttattaacaggatctgaggatagttctagtcgtga 456
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cttggatgatacatctgtctgggagttattaacaggatctgaggatagttctagtcgtga 672
Query: 457 ttctgaaaaggaaagacctgtttttcctggtctctttacagaaggcaaactgtgaggagt 516
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttctgaaaaggaaagacctgtttctcctggtctctttacagaaggcaaactgtgaggagt 612
Query: 517 gggtgcctgcaaagcagagagaaagagatgagggagaaaggcacaaaagcccagctcctg 576
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 611 gggtgcctgcaaagcagagagaaagagatgagcgagaaagccacaaaagcccagctcctg 552
Query: 577 ggtccagactttgtgtgttaagacagcaggggctcaacccactgaacaccttgca 631
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ggtccagactttgtgtgttaagacagcaggggctcaacccactgaacaccttgca 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
