BAC Information

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BAC

Clone NameMSMg01-333J12
Chromosome3 (Build37)
Map Location 130,350,886 - 130,351,144
singlet/doubletsinglet
Overlap genenone
Upstream geneEgf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1
Downstream gene2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333J12.T7 (MSMg01no333_j12.b1)MSMg01-333J12.TJ (MSMg01no333_j12.g1)
ACCAG449305AG449306
length723720
length of high quality
(start - end)
251 (49 - 299)342 (73 - 414)
definitionCHROMAT_FILE: MSMg01no333_j12.b1 PHD_FILE: MSMg01no333_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:48 2005CHROMAT_FILE: MSMg01no333_j12.g1 PHD_FILE: MSMg01no333_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCAGAAGATCCGCG
GAATTCTAGGACAGTCACGGCTACACAGACAAACCCTGTCTTGAAAAACC
AAAAGGCTGTTGAGAATGAGGATAATGATGGCTAAGTATTCACTTCTACT
TCTCGTGCTTTGAAATGTTTGTATTCTTCATGGTTGAAACTATTACCAAG
TAAGCCGCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATGATGATGATG
ATGATGATGATGATGATGGTGATGATGATGGTGATGGTGATGATGNNNNN
NNNNNNNNNNNNNNNNNNNNTTTTTTTTTNNNNNNNNNTNNNNNNNNNNN
NNNNNTTTTTTTTTTTTTTTCCCCCCCCTTNTTNTTTTNTTTTTTNTTTT
CTTTCCCCTTCTCCCCCCCCCCCCCCCNNTNTNTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTCCTTTTTTCTCCTTTTTTTTTTCTTTTTTTCT
CCNNNTNTTCTNNTNNNNNTNTCTTCCTCTTTTTTTTTTTTTTTNCTTTT
CTCCCTTCCCTTTTCTTTCCGGGGGGGTGTTTTCTTTTTTCTCCTCTCCC
TCTCTCCTCTTTTTCGTTCGTTGTGTGTCTCTGGGGGGGCGGGGGGGGCG
CCGCCGNCCCCCCCCCCCCCGGCCCGGCGGGGGNNNNCCCCNCNNCCCCC
CCTCCCCGGGATGGCGGCGGGGG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGAGTGGTGCTTAATGGGTCAAACTG
GTAGGAACATGGAAGACAGTGGGAGTGAGGGCAATTTGAACTTTGGGTAC
CTGGCTCAAGAAGTGTCAGAGTAGAAGAATTTTAGTATATTGCCTAGAGA
TTTTTTTCTTGTTAAATTTTGGTGAAGAAGATGGCTGCTTTTTGCCCTTG
TCTAAAGAATCTGCTTGGGGCTAAGGTGAAGAGATTCAGATTAATGGCAT
TGAGAAATGAAGTCTCTAATAAGCCTAGCATAGACTCTGTCCTGTGACTC
GCTCTCATGAAGAGTGGTTTGATCAAGTATAGCAACTGAGGAAAGAAAAC
ATACAAAATATATGCCCCAACAATTAAAGGGGCACCAACTAGGAAGTGGA
ATGAACCTACATCTTGCATTCAACAAAATAAACAGATTAAGGGAGAGGTG
ACCTCCCAGCAAGATCCCAACTAGCTAAGCCTATTGTTTATGCATTTGCA
ATTGCACAAAGGATAGTTATGTCATGTTAGGTATTATTATGATGGCTAAT
TTTTTTATTTGGACATAAAGAGATATGATTGTATGTCAAATTGACAAGGG
ATGAATTGTGGTGGCTATTCTCATTTGCCCAATTGACTATCTCTGGAAAA
ACTACCCTCCCCAATTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_j12.b1 MSMg01no333_j12.b1 CHROMAT_FILE:
MSMg01no333_j12.b1 PHD_FILE: MSMg01no333_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:48 2005
         (251 letters)



>mm_chr3_130350684_130351334
          Length = 651

 Score =  339 bits (175), Expect = 1e-97
 Identities = 230/259 (88%), Gaps = 18/259 (6%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctaggacagtcacggctacacagacaaaccctgtcttgaaaaaccaaaaggctgt 62
           |||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 203 gaattctaggacagccaaggctacacagacaaactctgtcttgaaaaaccaaaaggctgt 262

                                                                       
Query: 63  tgagaatgaggataatgatggctaagtattcacttctacttctcgtgctttgaaatgttt 122
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 263 tgagaatgaggataatgatggctaagtattcacttctacttctcgtactttgaaatgttt 322

                                                                       
Query: 123 gtattcttcatggttgaaactattaccaagtaagccgcctgctgctgctgctgctgctgc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtattcttcatggttgaaactattaccaagtaagccgcctgctgctgctgctgctgctgc 382

                                                                       
Query: 183 tgctgctgatgatgatgatgatg-----------------a-tgatgatgatgatggtga 224
           |||||||| || || || || ||                 | |||||||| || ||||||
Sbjct: 383 tgctgctgctgctgctgctgctgctgcggctgcggctgctactgatgatggtggtggtga 442

                              
Query: 225 tgatgatggtgatggtgat 243
           |||||||||||||||||||
Sbjct: 443 tgatgatggtgatggtgat 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)