BAC Information

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BAC

Clone NameMSMg01-333L06
Chromosome3 (Build37)
Map Location 58,590,258 - 58,590,557
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf13, Pfn2, EG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2
Downstream geneLOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333L06.T7 (MSMg01no333_l06.b1)MSMg01-333L06.TJ (MSMg01no333_l06.g1)
ACCAG449385AG449386
length740751
length of high quality
(start - end)
306 (107 - 412)344 (70 - 413)
definitionCHROMAT_FILE: MSMg01no333_l06.b1 PHD_FILE: MSMg01no333_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:56 2005CHROMAT_FILE: MSMg01no333_l06.g1 PHD_FILE: MSMg01no333_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGATCGGCGGAA
TTCTTTTTTTNTTTTCATAAAAATTTTTTTTGGCCAATGGCTCATAAGTT
TCCAGCACGGTAAGGAAGCTAAAGCCGAACAGAGGAGTTCATATCAAGAT
GGACAGGATATTAGAAGGGGTCAGAAAAGTACACAGCTTCCAGGATACAT
GGGCAGTGATCTTCCTCCACCTTGATGCAATTTCCCAGTTTCCAGAACCT
CCCCCAAATAGCGCCCCCAACTGGGGGTCAAGGGGATAATATGGATCTAT
AGGGGCCATTTCCTTCCGTGGACCATCCGCCTCCTATGTCTCGGGGGGTT
TATGCTTTCCTGAAACGATGGCATGAGTCGAAAACCCACCACACTGATTC
GAAACTGAAAACTAAGGCCCCCCGCCCACAACGGAGGGAGTGGGGTATGC
CAATCTTATTTTAAAAATTGGGATAAGGCATCTCCTAAGAAGTCAGCTTA
AGCTGAGCAAAGGTAACTGGGTGACGAGCTGGATGACGAACGAGTGGGTA
TGACGCTCTGTGGAGGGTTTGCCAGAACAAAGGAGAAGCCAACAGGACCG
ATGTGCAGAGAACAAGGTGCAGAGAGGGTGAGAAACAGCTGGACTGGCAG
GCAAAGCACCACATGGCATTCTACACCAAGGGGCGCGAGGAACTAAAAGG
ATTTTAATAANCCTGGCAAGATTTGCGGTTGGGCGGCGGG
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGACAGAACTGACTTTAATGAAGAAACATT
TCTTCTGGCTTGTGACTTAGAGGAGACAGTCTATCATGGCAGTGAAGATG
TGGCAGTGGTAGTACCTTGTGGCTTTGGTAACAAGAATGTGAAGTGGCTG
GTTACATTGCCTTAGCAGTCAGGAAGCAGAGCATGAGGGCCTGAATGGGA
CAGTCTATGTGACCCATAAGACCCACTCCTAGGGACCCATGTCCTCCAGC
AAGACTCCACCTCCTAAAGATTCTACAGCCTTCTGAAACAGCATCATTAG
CTAGGGACCATGAGGTAAAACAAACAAAACAGAAGTCAGGATGGGTCAGG
TAACTGTGAGAGGTCACCCCACTATTACCATGTTGGTATTTGTTACAGCT
ATGATTTCAGAGGGTTCTGGGCAGGTGAGTAGTTGAGCCTTAGAAAAATA
CCTTATGAAAAGATCCAGATGTGCCTTTCAGGGTATGAACAGTGCTAGCA
CATCTATATTTCCCATTGAAATTATCCTGCTAGAATGGTTATCCAGCTTC
TAAAGGTGACCCAAGTTAGCTTATGTATATAGTGAACCGGGCCCCTTCAA
GCCAAAAAATCTCCTATTTAAATGTCCAAAACCGTCCCCACAAATAAACC
TATAATGTCCAGCCCCAACCCGATTTGCCTTTATTGAGGCCTTATGTCCT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_l06.b1 MSMg01no333_l06.b1 CHROMAT_FILE:
MSMg01no333_l06.b1 PHD_FILE: MSMg01no333_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:56 2005
         (306 letters)



>mm_chr3_58589852_58590557
          Length = 706

 Score =  495 bits (256), Expect = e-144
 Identities = 289/300 (96%)
 Strand = Plus / Minus

                                                                       
Query: 7   aggaagctaaagccgaacagaggagttcatatcaagatggacaggatattagaaggggtc 66
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 706 aggaagctaaagccgaacagagaagttcatatcaagatggacaggatattagaaggggtc 647

                                                                       
Query: 67  agaaaagtacacagcttccaggatacatgggcagtgatcttcctccaccttgatgcaatt 126
           ||  |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 646 agggaagtacacagcttcaaggatacatggtcagtgatcttcctccaccttgatgcaatt 587

                                                                       
Query: 127 tcccagtttccagaacctcccccaaatagcgcccccaactgggggtcaaggggataatat 186
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 586 tcccagtttccagaacctcccccaaatagcgcccccaactgggggtcaagtgtataatat 527

                                                                       
Query: 187 ggatctataggggccatttccttccgtggaccatccgcctcctatgtctcggggggttta 246
           |||||||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||
Sbjct: 526 ggatctataggggccatttccttccgtgtaccagccgcctcctacgtctcgtggggttta 467

                                                                       
Query: 247 tgctttcctgaaacgatggcatgagtcgaaaacccaccacactgattcgaaactgaaaac 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgctttcctgaaacgatggcatgagtcgaaaacccaccacactgattcgaaactgaaaac 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)