BAC Information

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BAC

Clone NameMSMg01-333N21
Chromosome3 (Build37)
Map Location 98,974,787 - 99,139,176
singlet/doubletdoublet
Overlap geneWars2, Tbx15
Upstream geneLOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557
Downstream geneM6pr-ps, Spag17, LOC623045, Wdr3, Gdap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333N21.T7 (MSMg01no333_n21.b1)MSMg01-333N21.TJ (MSMg01no333_n21.g1)
ACCAG449509AG449510
length709717
length of high quality
(start - end)		646 (64 - 709)612 (77 - 688)
definitionCHROMAT_FILE: MSMg01no333_n21.b1 PHD_FILE: MSMg01no333_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:08 2005CHROMAT_FILE: MSMg01no333_n21.g1 PHD_FILE: MSMg01no333_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,974,787 - 98,975,432)(99,138,571 - 99,139,176)
sequence
GCGGCCGCTATACGACTCACTTATTTCCCGAGGTGCGCGGAATTCATCAG
ACTGCCCACAGAGAAGCCAGGAAGAAGGTACTATGTGCGTAAAAGCTTAG
TGTCTAGAGAGAGTGTAGCTTTCCCAAGGAAGTAGGCAGACAGTTCCAGA
TGTAGCTGGAGTCTTGTTAACATAGTGGAGCCCGTGGGTAGGCTTCAGCA
GGGAAGCCAAAATTGTTAGAAACAGGAGGATTTGAGAAATTCGCCATAAC
ATAAATCACCTGGTAGGCTACTGGGCTGTGTGGTATTTTTAAAATTTAAA
GTTTTCTCAGGATAGAAAAGCAGAGCAAAATCTCTTCTTTGCAACCCAGA
TGATGATGTTTCAGATCTTTACCCAGCTTGCTGTGGGCCCGTCCTCATAG
ACCAGCTCTGCTCCACTGGTCCTCACCTTTCTCATTCTTCTCCCTCTCCT
GCTTCATGGGAGGGGTTGCTTCCTAATGCCTTTCTGAAGCAATTGTGATT
TCGAAACACTAATATCAAACCACGAATCCGGTGCTTTGCACAAGAGTTGC
CCATGGGTTAGAGTCTGAGGCAAGCACTGCCCTTGCTCGTAACATCAAGT
ATTTTACCCTCAATGACTGCCCAGCATAGCCATTTGTCACCTGCAAGATG
CACTTTTAAACATGGCAGGTGACACTGTGAAGAATAAGAAGGCCATTGCA
TTGTTTATG

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGCACTATCCATATACTCTGGC
TCTAGATAAAATGTAAAAGCAGTTCCATGTTACCTAATTCCATTTCTCAT
TTTCTCATCAGAGAACCAAAAGCGTGTCCTTCAAGCCCCTTTAGGCCTCA
TTATCTTGCAGATACTTCAGACTCCAATATACTAACCATTAAAAAGACGT
CACTGGATTCAATGACACCATCCTTGGGCAGGAGCCATAGATAATAAAAC
AATTGCCAACTTTCCCTGGCAAATCCATATGGCCAGGAGGACAATGGTGG
AAACAGTTTATGACAAGGGAGGGAGAACAAATAATAAAGCAGAGAGAAGC
ATTAAGTTCTGGCTAAACAAACACCCATGGCTTGGATGAATAGGAGGAAT
ACAATTGCCAATAGGAGGGGGAGGATGCCAAAATCTAGTATAGGGCCAGC
TACCTTAAACGACAAATGCAACAGTCCCCGAGAAGTTTAACACTGATTGC
TTCCATAGACCTGCTGAATGGCAGAAGTCACTCATGCCAGGGATAACAAG
AAAGTATGCAAAAATCTAGAAAGGCTTGCAAGACTGCCAGGAAAGAGCAG
GATGAGGTTAGCAGGGAAACTATAGCCAATGGCCCTAGAAGGGACAAATG
CAAACACAGCAATTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_n21.b1 MSMg01no333_n21.b1 CHROMAT_FILE:
MSMg01no333_n21.b1 PHD_FILE: MSMg01no333_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:08 2005
         (646 letters)



>mm_chr3_98974587_98975632
          Length = 1046

 Score = 1133 bits (586), Expect = 0.0
 Identities = 631/646 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagccaggaagaaggtactatgtgcgtaaaagcttagtgtctagagagagtgtagctttc 60
           |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 aagctaggaagagggtactatgtgtgtaaaagcttagtgtctagagagagtgtagctttc 260

                                                                       
Query: 61  ccaaggaagtaggcagacagttccagatgtagctggagtcttgttaacatagtggagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaggaagtaggcagacagttccagatgtagctggagtcttgttaacatagtggagccc 320

                                                                       
Query: 121 gtgggtaggcttcagcagggaagccaaaattgttagaaacaggaggatttgagaaattcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 gtgggtaggcttcagcagggaagccaaaattgttagaaacaggaggatttgagaaattct 380

                                                                       
Query: 181 ccataacataaatcacctggtaggctactgggctgtgtggtatttttaaaatttaaagtt 240
           |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ccatcacataaatcacctggtaggctactgggctgtgtcgtatttttaaaatttaaagtt 440

                                                                       
Query: 241 ttctcaggatagaaaagcagagcaaaatctcttctttgcaacccagatgatgatgtttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 ttctcaggatagaaaagcagagcaaaatctcttctttgcaacccagatgatgacgtttca 500

                                                                       
Query: 301 gatctttacccagcttgctgtgggcccgtcctcatagaccagctctgctccactggtcct 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 gatctttacccagcttgctgtgggcccgtcctcataaaccagctctgctccactggtcct 560

                                                                       
Query: 361 cacctttctcattcttctccctctcctgcttcatgggaggggttgcttcctaatgccttt 420
           | ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 561 cgcctttctcattcttctccctctcctgcttcatgggaggggttggttcctagtgccttt 620

                                                                       
Query: 421 ctgaagcaattgtgatttcgaaacactaatatcaaaccacgaatccggtgctttgcacaa 480
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 ctgaagtaattgtgatttcgaaacactaatatcaaaccacgaatctggtgctttgcacaa 680

                                                                       
Query: 481 gagttgcccatgggttagagtctgaggcaagcactgcccttgctcgtaacatcaagtatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagttgcccatgggttagagtctgaggcaagcactgcccttgctcgtaacatcaagtatt 740

                                                                       
Query: 541 ttaccctcaatgactgcccagcatagccatttgtcacctgcaagatgcacttttaaacat 600
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaccctcaatgactgcccagcgtagccatttgtcacctgcaagatgcacttttaaacat 800

                                                         
Query: 601 ggcaggtgacactgtgaagaataagaaggccattgcattgtttatg 646
           |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggcaggtggcactgtgaagaataagaaggccattgcattgtttatg 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no333_n21.g1 MSMg01no333_n21.g1 CHROMAT_FILE:
MSMg01no333_n21.g1 PHD_FILE: MSMg01no333_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:08 2005
         (612 letters)



>mm_chr3_99138365_99139376
          Length = 1012

 Score = 1094 bits (566), Expect = 0.0
 Identities = 596/606 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   ctatccatatactctggctctagataaaatgtaaaagcagttccatgttacctaattcca 66
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ctatccatatactctggctctggataaaatgtaaaagcagttccatgttacctaattcca 753

                                                                       
Query: 67  tttctcattttctcatcagagaaccaaaagcgtgtccttcaagcccctttaggcctcatt 126
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 752 tttctcattttctcatcagagaaccaaaaacgtgtccttcaagcccctttaggcctcatt 693

                                                                       
Query: 127 atcttgcagatacttcagactccaatatactaaccattaaaaagacgtcactggattcaa 186
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 692 atcttgcagatacttcagactccaatatactaaccattaaaaagacgtcactgggttcaa 633

                                                                       
Query: 187 tgacaccatccttgggcaggagccatagataataaaacaattgccaactttccctggcaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tgacaccatccttgggcaggagccatagataataaaacaattgccaactttccctggcaa 573

                                                                       
Query: 247 atccatatggccaggaggacaatggtggaaacagtttatgacaagggagggagaacaaat 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atccatatggccaggaggacaatggtggaaacagtttatgacaagggagggagaacaaat 513

                                                                       
Query: 307 aataaagcagagagaagcattaagttctggctaaacaaacacccatggcttggatgaata 366
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 512 aataaagcagagagaagcattaagttctggctaaacaaacagccatggcttggataaata 453

                                                                       
Query: 367 ggaggaatacaattgccaataggagggggaggatgccaaaatctagtatagggccagcta 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggaggaatacaattgccaataggagggggaggatgccaaaatctagtatagggccagcta 393

                                                                       
Query: 427 ccttaaacgacaaatgcaacagtccccgagaagtttaacactgattgcttccatagacct 486
           |||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 392 ccttgaacgacaaatgcaacagtccccgagaagttcaacaccgattgcttccatagacct 333

                                                                       
Query: 487 gctgaatggcagaagtcactcatgccagggataacaagaaagtatgcaaaaatctagaaa 546
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gctgaatggcagaagtcacccatgccagggataacaagaaagtatgcaaaaatctagaaa 273

                                                                       
Query: 547 ggcttgcaagactgccaggaaagagcaggatgaggttagcagggaaactatagccaatgg 606
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 272 ggcttgcaagactgccaggaaagagcaggatgaggttagcagggaatctatagccaatgg 213

                 
Query: 607 ccctag 612
           ||||||
Sbjct: 212 ccctag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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