Query= MSMg01no333_p10.b1 MSMg01no333_p10.b1 CHROMAT_FILE:
MSMg01no333_p10.b1 PHD_FILE: MSMg01no333_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:15 2005
(642 letters)
>mm_chr3_55676410_55677451
Length = 1042
Score = 930 bits (481), Expect = 0.0
Identities = 516/535 (96%), Gaps = 12/535 (2%)
Strand = Plus / Minus
Query: 1 atatatttggtatgatgcttgattttacggaacaagctttacataaattaatacagcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 atatatttggtatgatgcttgattttacggaacaagctttacataaattaatacagcagt 476
Query: 61 aatggctatagtatttaaacttcctttttcattaagaaataatgatccttcaaaagtagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 475 aatggctatagtatttaaacttcctttttcattaagaaataatgatccttcaaaaatagt 416
Query: 121 ttgtataggtcatcaaaactcagtttttagtgtggctgtgctttcttccatccttgctct 180
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttgtatggggcatcaaaactcagtttttagtgtggctgtgctttcttccatccttgctct 356
Query: 181 gtatcctgagaaactacctttgtttatacagtatctcaatgtacattcctgcctttgatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gtatcctgagaaactacctttgtttatacagtatctcaatgtacattcctgcctttgatg 296
Query: 241 tcagtaaacaatgttttcatcataatacagttccaaaattaaactaagttttatgcttac 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tcagtaaacaatattttcatcataatacagttccaaaattaaactaagttttatgcttac 236
Query: 301 tgaagagtggagagtaaagagtgaaccaaatgacaagaaatggcgatggcgaaagagagc 360
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 235 tgaagagtggagagtaaagagtgaacgaaatgacaagaaatggcgatggggaaagagagc 176
Query: 361 tggctcatcatcatccagagaatccagactaaactctcagcacacacatgatggctcaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tggctcatcatcatccagagaatccagactaaactctcagcacacacatgatggctcaca 116
Query: 421 agctctgtgactccagttactggggattatgccctcttcccaggcatcagaaatgaaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 agctctgtgactccagttactggggattatgccctcttcccaggcatcagaaatgaaaag 56
Query: 481 ttgg------------aacattgtaagagataagggagccgaaattcttgtgctt 523
|||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 55 ttggttttctgtcattaacattgtaagagataagggagcagaaattcttgtgctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_p10.g1 MSMg01no333_p10.g1 CHROMAT_FILE:
MSMg01no333_p10.g1 PHD_FILE: MSMg01no333_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:15 2005
(600 letters)
>mm_chr3_55504006_55505007
Length = 1002
Score = 990 bits (512), Expect = 0.0
Identities = 569/606 (93%), Gaps = 33/606 (5%)
Strand = Plus / Plus
Query: 1 ttttgatatataatgagtg-ttttcccattttatttatttttctattttctctttctgtt 59
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaatatataatgagtgtttttcccattttatttatttttctattttctctttctgtt 260
Query: 60 cctttagccttgatctatcaatattttctacttaaaatctcttaagttatatcaagtca- 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctttagccttgatctatcaatattttctacttaaaatctcttaagttatatcaagtcat 320
Query: 119 tttttttagaataagcatctataagataagaaaaaatgagtaacaaaaattgtagttagg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttttagaataagcatctataagataagaaaaaatgagtaacaaaaattgtagttagg 380
Query: 179 gaaatatttatgataaactaaagcattgaaagaaaactctggccgggtgtggtgg----t 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gaaatatttatgataaactaaagcattgaaagaaaactctggccgggtgtggtggcgcat 440
Query: 235 gaaaacctttaatcccagcacttggagggcagaggcaggcggatttatgagttcgaggcc 294
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 g----cctttaatcccagcacttggagggcagaggcaggcggatttatgagttcgaggcc 496
Query: 295 agcctggtctacagagtgagttccaggacagccagggatacacagagaaaccccgccttg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 497 agcctggtctacagagtgagttccaggacagccagggatacacagagaaaccctgtcttg 556
Query: 355 aaaagtaaataaataaataaataaataaataaataaataaataaaataaaataaaagaaa 414
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 557 aaaagtaaataaataaataaat---------------------aaataaaataaaagaaa 595
Query: 415 gaaagaaggaaaggaagagagagagaaaaaaaactctggatacaatgctgatcttgtctg 474
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 596 gaaagaaggaaaggaagagagagag--aaaaaactccggatacaatgctgatcttgtctg 653
Query: 475 agtaagtactaaatgtaaactcaaagaatgatcttcaaagtagattataaattttaggaa 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 agtaagtactaaatgtaaactcaaagaatgatcttcaaagtagattataaattttaggaa 713
Query: 535 tttgaggctttcaaggagaaacatgtccactacagtatctcagcactttattctggcaca 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tttgaggctttcaaggagaaacatgtccactacagtatctcagcactttattctggcaca 773
Query: 595 tcacta 600
||||||
Sbjct: 774 tcacta 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1002
Length adjustment: 10
Effective length of query: 590
Effective length of database: 992
Effective search space: 585280
Effective search space used: 585280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
