BAC Information

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BAC

Clone NameMSMg01-334H24
Chromosome3 (Build37)
Map Location 135,594,111 - 135,744,960
singlet/doubletdoublet
Overlap geneLOC100039350, LOC383923, Bank1
Upstream geneTacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8
Downstream geneLOC100039477, LOC668868, Ppp3ca, LOC668870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334H24.T7 (MSMg01no334_h24.b1)MSMg01-334H24.TJ (MSMg01no334_h24.g1)
ACCAG449981AG449982
length750750
length of high quality
(start - end)
503 (77 - 579)614 (75 - 688)
definitionCHROMAT_FILE: MSMg01no334_h24.b1 PHD_FILE: MSMg01no334_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:57 2005CHROMAT_FILE: MSMg01no334_h24.g1 PHD_FILE: MSMg01no334_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,744,458 - 135,744,960)(135,594,111 - 135,594,724)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCGGA
ATTCTTTAGATGCTTTGCTTGAAAGTCTATATGCAAAACAACCACTCTCC
TTAAATAGCAGTTATCCAGTACTGACATTAATTTCGTAATTTAGCCATGT
CATGATTTACGTGTGATGGCTTCCCTCTGCTTTAACGCTTGTCTGCAGCT
TGTTGTGCAGAGGCTACAAAACAGAGTAAGGCCCGGCTGGAAGCAGGTCA
CATGACTGGGCTTTGAGGTTTATAACCAGCCCTAGATTTGACACAAACTC
TCTCCTCGCCTCTTGGTTTTCTGAGATGTAGCAAATTCTCGTAGCCCCAA
ACTTCTCTGCTTCGGCATTAAAGCTTTTGCCACTATGAGGGCCATAGCCT
CCCAAACTACAAGCAAGCAATGGATCTATTCTCCCTTAACTTGCTTCTGT
TGGGCACTTTCAACAAGAAAGGTAATTAATACTAAATGTTGGGAGTGAAA
GTAGGCTGTAGCTCTAATAAACCTGACCATATAGCTCATTAGAACAAGAA
GAAATGTGGAGGAGTTTACAGCTGAAGTTCAGAGAAGCCTTGGAATGCTA
TAGAGAGAGATTAATGAGCCTCTGTACTCTGGTGGGAGTATAATAGACCA
TAACGCTGTTATAAATCCAGACAGAAAGACCAGGCTCATGAGGTTTTAAG
CAGGAGCAAGTAATGGAACTAGGCAGCCCTGATGGTATATGCTGGCAAAG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAACTGACTCAGCTAGGGCATCGGGC
TTTTGCAGCAGAAAATACATTTGCATAAGTTCTACTAGAAAAAGCACAAA
AAGTATGATGTCTTCAATAAAGAATGCAGTAGGGCGGTTAAGTAGCCAGG
TGACAACAATGTAAATAAACTACCAGGTTAGATAATCAAGCCTTTCTGAG
AGACATCAGGAAGGGGATAAATATACTGACATAACACAAAACTAAGAGCT
CTGGGAAATATGGGCAGAAGCACTAATATCTAAGTGAGAATTATTTCTAA
CGGAAAAGCTATCCTAGTGAGAAAACAAAACAAAGATACTCATACAATTA
AAGAGAAGGCTTTATGCAGTGTAAAACAGAATAGCTTTAAAAAAAAAGAT
TTAGATATGTATAGGATCCAAGCCTAAGAAAATTTCAAACAGCTTCAAAA
ACTAAACATATATTTCCCAATTCTTCTTGGTAGTGATGATTGAGTCCAGG
GCCTCACATACTCTAAGCACATATTATGTGCCACTGATATATATAAGCAC
ATATTATATATCACTGTCATATATAAGGACATATTATATACCACTGTTAT
ATATAAGCACATATTATATACCGTTGTCATATATAAGTATATATTATGTG
CCACTGGTCAATATTAGCACATATTATGTACCATTGTCATATATAAGCAN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_h24.b1 MSMg01no334_h24.b1 CHROMAT_FILE:
MSMg01no334_h24.b1 PHD_FILE: MSMg01no334_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:57 2005
         (503 letters)



>mm_chr3_135744458_135745360
          Length = 903

 Score =  934 bits (483), Expect = 0.0
 Identities = 498/503 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatatgcaaaacaaccactctccttaaatagcagttatccagtactgacattaatttcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 503 ctatatgcaaaacaaccactctccttaaatagcagttatccagtactgacattaatttca 444

                                                                       
Query: 61  taatttagccatgtcatgatttacgtgtgatggcttccctctgctttaacgcttgtctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taatttagccatgtcatgatttacgtgtgatggcttccctctgctttaacgcttgtctgc 384

                                                                       
Query: 121 agcttgttgtgcagaggctacaaaacagagtaaggcccggctggaagcaggtcacatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agcttgttgtgcagaggctacaaaacagagtaaggcccggctggaagcaggtcacatgac 324

                                                                       
Query: 181 tgggctttgaggtttataaccagccctagatttgacacaaactctctcctcgcctcttgg 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tggactttgaggtttataaccagccctagatttgacacaaactctctcctcgcctcttgg 264

                                                                       
Query: 241 ttttctgagatgtagcaaattctcgtagccccaaacttctctgcttcggcattaaagctt 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 263 ttttctgagatgtagcaaattctcatagccccaaacttctctgcttcggcattcaagctt 204

                                                                       
Query: 301 ttgccactatgagggccatagcctcccaaactacaagcaagcaatggatctattctccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttgccactatgagggccatagcctcccaaactacaagcaagcaatggatctattctccct 144

                                                                       
Query: 361 taacttgcttctgttgggcactttcaacaagaaaggtaattaatactaaatgttgggagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 taacttgcttctgttgggcactttcaacaagaaaggtaattaatactaaatgttgggagt 84

                                                                       
Query: 421 gaaagtaggctgtagctctaataaacctgaccatatagctcattagaacaagaagaaatg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 83  gaaagtaggctgtagctctaataaacctgaccatatagctcattagaacaagaagaaacg 24

                                  
Query: 481 tggaggagtttacagctgaagtt 503
           |||||||||||||||||||||||
Sbjct: 23  tggaggagtttacagctgaagtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no334_h24.g1 MSMg01no334_h24.g1 CHROMAT_FILE:
MSMg01no334_h24.g1 PHD_FILE: MSMg01no334_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:57 2005
         (614 letters)



>mm_chr3_135593911_135594924
          Length = 1014

 Score = 1149 bits (594), Expect = 0.0
 Identities = 609/614 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taactgactcagctagggcatcgggcttttgcagcagaaaatacatttgcataagttcta 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taactgactcagctagggaatcgggcttttgcagcagaaaatacatttgcataagttcta 260

                                                                       
Query: 61  ctagaaaaagcacaaaaagtatgatgtcttcaataaagaatgcagtagggcggttaagta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ctagaaaaagcacaaaaagtatgatgtcttcaataaagaatgcagtaggggggttaagta 320

                                                                       
Query: 121 gccaggtgacaacaatgtaaataaactaccaggttagataatcaagcctttctgagagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaggtgacaacaatgtaaataaactaccaggttagataatcaagcctttctgagagac 380

                                                                       
Query: 181 atcaggaaggggataaatatactgacataacacaaaactaagagctctgggaaatatggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaggaaggggataaatatactgacataacacaaaactaagagctctgggaaatatggg 440

                                                                       
Query: 241 cagaagcactaatatctaagtgagaattatttctaacggaaaagctatcctagtgagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaagcactaatatctaagtgagaattatttctaacggaaaagctatcctagtgagaaa 500

                                                                       
Query: 301 acaaaacaaagatactcatacaattaaagagaaggctttatgcagtgtaaaacagaatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaaacaaagatactcatacaattaaagagaaggctttatgcagtgtaaaacagaatag 560

                                                                       
Query: 361 ctttaaaaaaaaagatttagatatgtataggatccaagcctaagaaaatttcaaacagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttaaaaaaaaagatttagatatgtataggatccaagcctaagaaaatttcaaacagct 620

                                                                       
Query: 421 tcaaaaactaaacatatatttcccaattcttcttggtagtgatgattgagtccagggcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaaaaactaaacatatatttcccaattcttcttggtagtgatgattgagtccagggcct 680

                                                                       
Query: 481 cacatactctaagcacatattatgtgccactgatatatataagcacatattatatatcac 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacatactctaaacacatattatgtgccactgatatatataagcacatattatatatcac 740

                                                                       
Query: 541 tgtcatatataaggacatattatataccactgttatatataagcacatattatataccgt 600
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 741 tgtcatatataaggatatattatataccactgttatatataagcacatattatataccgc 800

                         
Query: 601 tgtcatatataagt 614
           ||||||||||||||
Sbjct: 801 tgtcatatataagt 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)