BAC Information

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BAC

Clone NameMSMg01-334L20
Chromosome3 (Build37)
Map Location 64,636,049 - 64,636,294
singlet/doubletsinglet
Overlap gene4933425M15Rik
Upstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918
Downstream geneLOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334L20.T7 (MSMg01no334_l20.b1)MSMg01-334L20.TJ (MSMg01no334_l20.g1)
ACCAG450160AG450161
length754754
length of high quality
(start - end)
249 (73 - 321)247 (72 - 318)
definitionCHROMAT_FILE: MSMg01no334_l20.b1 PHD_FILE: MSMg01no334_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:16 2005CHROMAT_FILE: MSMg01no334_l20.g1 PHD_FILE: MSMg01no334_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGTGAGAGGGCG
GAATTCAAGAAGGTTGACTATAAAAAATCAAATAACCCCATTAAAAAATG
GGGCTCAGAGCTGAACAAAGAATTCTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACACTGAGATTCAACTTCACTCCAGTCAGAATGGCTAAGAT
CAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAA
CACTCCTCCATTGTTGGTGGGTTTGTTTTGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTTGACATAGTACTACTGGAGGATC
CTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAG
AAGAACACATGCTCCACTATGTTCATAGCAGCCTTATTTTAATAGCCAGA
AGCTGGAAAGAACTTAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATTTACACAATGGAATACTATTCAGCTATTAAAAAAATGAATT
TATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AAGTATTCCAATCACAAAGGAACTCTCACAATATGTACTCACTGATAAGT
GGATATTACCCCAGAAACTTATAATACCCAAGATACAAGATACCACTTGC
CTAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCGAAATTCTCTTGGATCAGGGACTGAAATATCACTT
TTTCTTTTAAGAAACTGATTCTCGATAAACACTGATGCCTAACAATAAGG
AAATAAATGTTAAGGAAAATAAGTGACTGTGAAAAGTACCGGGACTATTT
TTCAGATAGATTTGTTAGTGGAGACTTCCTAAGCCAGAGACATGGAAAGA
CCATAACTGACAAGACAGTAGTTATCCTATTTATTAGGACCATTGAAGTT
CAGCTTGAATAGCAAGAAAATTTTTGTTGATGTGATTCTGTTGAAGCTCT
TCATGTGGAAGGAATTATCTTGACCTACCTATGTAGGCTGACACAACAAC
AGCTTTATAAAGCATTCATGCATAATTTCCTAGTTCAACATATTGCTCAT
TTATCACAATTGAGTTCACAGACAAGGATGAATCATAAGCTGAATCAATG
ACACAGAAAACATGATCATTTGCAACACTCATTCATGTTTTCCTCTGTCA
ACTACTGCTAACTGATGAGCACCTATACATTTTGAGTCTAACCCCTAAAA
CATAATTAGGCACACTGTCATAAGAACAATACATTATGACCTTAAAAATG
CCCTCGTTCACTTGTCGCATCTTTTTATCCCCCCCCTGTTCTTTATTCCT
TCCCCCCATTTATCTCCCTTCCCTCTTCTCTCCCCTTTTCCCCCCTTTTT
AGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_l20.g1 MSMg01no334_l20.g1 CHROMAT_FILE:
MSMg01no334_l20.g1 PHD_FILE: MSMg01no334_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:16 2005
         (247 letters)



>mm_chr3_64635849_64636494
          Length = 646

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%), Gaps = 1/247 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttggatcagggactgaaatatcactttttcttttaagaaactgattctcgataaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ctcttggatcagggactgaaatatcactttttcttttaagaaactgattct-gataaaca 259

                                                                       
Query: 61  ctgatgcctaacaataaggaaataaatgttaaggaaaataagtgactgtgaaaagtaccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgatgcctaacaataaggaaataaatgttaaggaaaataagtgactgtgaaaagtaccg 319

                                                                       
Query: 121 ggactatttttcagatagatttgttagtggagacttcctaagccagagacatggaaagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggactatttttcagatagatttgttagtggagacttcctaagccagagacatggaaagac 379

                                                                       
Query: 181 cataactgacaagacagtagttatcctatttattaggaccattgaagttcagcttgaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cataactgacaagacagtagttatcctatttattaggaccattgaagttcagcttgaata 439

                  
Query: 241 gcaagaa 247
           |||||||
Sbjct: 440 gcaagaa 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space:   151606
Effective search space used:   151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)