Query= MSMg01no334_m11.b1 MSMg01no334_m11.b1 CHROMAT_FILE:
MSMg01no334_m11.b1 PHD_FILE: MSMg01no334_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:19 2005
(613 letters)
>mm_chr3_89514808_89515820
Length = 1013
Score = 1170 bits (605), Expect = 0.0
Identities = 611/613 (99%)
Strand = Plus / Minus
Query: 1 tctgagtagtatagactcaggcaagctctctgcagggtgtctgtctctccctgtagagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tctgagtagtatagactcaggcaagctctctgcagggtgtctgtctctccctgtagagca 754
Query: 61 gggatcctggagtcaaccatgagattggagagggctgcagatgagcacttgagcagtgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gggatcctggagtcaaccatgagattggagagggctgcagatgagcacttgagcagtgtc 694
Query: 121 tggtctggggtttagtttttctttccttgagtcctggtaccagggagcagctcacagatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tggtctggggtttagtttttctttccttgagtcctggtaccagggagcagctcacagatt 634
Query: 181 cagtctccataggaggcttgacttgctgtgaggctggagagagggagagagtgctgtagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cagtctccataggaggcttgacttgctgtgaggctggagagagggagagagtgctgtagg 574
Query: 241 tgagtctgcgattagtctgtggcccagagtctagtcgtggagagttagtatgcggggaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 573 tgagtctgcgattagtctgtggcccagagtctagtcgtggagagttagtatgctgggaat 514
Query: 301 tacacagctgcaggacttacgtgaactgtaagtagcaggctttatgacaggtgtataagc 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tacacagctgcaggacttacatgaactgtaagtagcaggctttatgacaggtgtataagc 454
Query: 361 tgcagacaaacacagctgagtagctaaagagctgcttagttaagttgcattcaaaacact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tgcagacaaacacagctgagtagctaaagagctgcttagttaagttgcattcaaaacact 394
Query: 421 ggggctggaggtagggctcccttttgcagaagcaaggagctccctttaaccattttcctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ggggctggaggtagggctcccttttgcagaagcaaggagctccctttaaccattttcctc 334
Query: 481 gaatccagcccaggcagcatagcaagagcccatctacagcaaaacaaaacccttcttgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaatccagcccaggcagcatagcaagagcccatctacagcaaaacaaaacccttcttgaa 274
Query: 541 tatgcaaacgtttgggcttagtgcagctaacaaacttgtgagttgatgtttttcagtctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tatgcaaacgtttgggcttagtgcagctaacaaacttgtgagttgatgtttttcagtctc 214
Query: 601 ttgtgatgaagta 613
|||||||||||||
Sbjct: 213 ttgtgatgaagta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_m11.g1 MSMg01no334_m11.g1 CHROMAT_FILE:
MSMg01no334_m11.g1 PHD_FILE: MSMg01no334_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:19 2005
(641 letters)
>mm_chr3_89353869_89354909
Length = 1041
Score = 1087 bits (562), Expect = 0.0
Identities = 622/658 (94%), Gaps = 29/658 (4%)
Strand = Plus / Plus
Query: 1 attcattctccatctagcatttattgtgcatgtgctaagtcttatgtaaggcaaggggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 attcattctccatctagcatttattgtgcatgtgctaagtcttatgtaaggcaaggggac 233
Query: 61 agaaggacagatgag-cctccttccctcttacctctggtggccagaggagaagaccaggg 119
||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 234 agaaggacagatgagtccccct-ccctcttacctctggtggccagaggagaagaccaggg 292
Query: 120 cctgtgggccttccgggctctagcaggctcctctggacttcactctttagttggcaagct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cctgtgggccttccgggctctagcaggctcctctggacttcactctttagttggcaagct 352
Query: 180 taaagcttgttcctggaaaacagaaatagtgcaaaagggaagaagtgtgggtgaggagca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 taaagcttgttcctggaaaacagaaatagtgcaaaagggaagaagtgtgggtgaggagca 412
Query: 240 tgagtcgaaactggaggagagagatgggagaatctagcaaact----------------- 282
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgagtcgaaactggaggagagagatgggagaatctagcaaactttcccgtgagggaatgc 472
Query: 283 -cctcgcagcgccacagttccctgttgagaccctggccttgggcagcaggaggctgagga 341
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tcctcgcagcgccacagttccctgttgagaccctggccttgggcagcaggaggctgagga 532
Query: 342 -gg--------ctgttcgttctctgcgctgcagggcctgagttttatcatgcttgttttt 392
|| |||||| |||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 533 aggacaggtccctgttcattctctgcgctgcatggcctgagttttatcatgcttattttt 592
Query: 393 ccaagacaaggtttgtctaagtagctctggctgtcctggggctcactatgtagataagcc 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 593 ccaagacaaggtttgtctaagtagctctggctgtcctggggctcactatgtagatgagcc 652
Query: 453 ttgagctcaaggtgaggtacctacctgcctgtcttcctagtgctgggattaaagatgtga 512
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ttgagctcaaggtgaggcacctacctgcctgtcttcctagtgctgggattaaagatgtga 712
Query: 513 gccaccatacttggctagtttcatcatctgtaaaggcaggttttgatgagatgctacaaa 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gccaccatacttggctagtttcatcatctgtaaaggcaggttttgatgagatgctacaaa 772
Query: 573 ggcctgcttagatctacacttagagagaggcgtggggctggtgtaccaaatagaagcc 630
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 773 ggcctgcttagatctacacttagagagaggcgtggggctggtggaccaaatagaagcc 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
