Query= MSMg01no335_g06.b1 MSMg01no335_g06.b1 CHROMAT_FILE:
MSMg01no335_g06.b1 PHD_FILE: MSMg01no335_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:08 2005
(502 letters)
>mm_chr3_36206721_36207624
Length = 904
Score = 924 bits (478), Expect = 0.0
Identities = 494/500 (98%), Gaps = 2/500 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgtattactgatgcagtcaacaagatttagttatttctgtggcatataccat 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaattctttgtaataatgatgcagtcaacaagatttagttatttctgtggcatataccat 441
Query: 65 tatgatagcaactaggttgtgactgataatgttataaaagtattattaaattccatttat 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 440 tatgatagcaactaggttgtgacggataatgttataaaagtattattaaattccatttat 381
Query: 125 tatatgtgtattaattacacatctgtagtgagaattttggttagaaatt--aaaaaaaaa 182
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 380 tatatgtgtattaattacacatctgtagtgagaattttggttaaaaattaaaaaaaaaaa 321
Query: 183 acccaaaccccaaaacaacaacaacaaaacaaccacaggaatattatgggaatgtggttt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acccaaaccccaaaacaacaacaacaaaacaaccacaggaatattatgggaatgtggttt 261
Query: 243 tgttttaatcccaggtatgggacatggggctgtttcagattgtccacagcagctgactct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgttttaatcccaggtatgggacatggggctgtttcagattgtccacagcagctgactct 201
Query: 303 gatttgcctcatgctctagcaggggtgtgattttcccactggcaggtagttcctgtgatt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gatttgcctcatgctctagcaggggtgtgattttcccactggcaggtagttcctgtgatt 141
Query: 363 gtgtgccattggaattctggggacttttcagagggtgtgtaaatgctagggtcccaggag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 gtgtgccattggaattctggggacttttcagagggtgtgtaaatgctagggtcccaggag 81
Query: 423 gttgccgttgatgaattgctagttgccattgatcattgattgcagtttgttttgtagtcc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 gttgccgttgatgaattgctagttgccattgatcattgattgcagtttgttttgtagtcc 21
Query: 483 tgtgaaaagaagaagacatt 502
||||||||||||||||||||
Sbjct: 20 tgtgaaaagaagaagacatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 904
Length adjustment: 10
Effective length of query: 492
Effective length of database: 894
Effective search space: 439848
Effective search space used: 439848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_g06.g1 MSMg01no335_g06.g1 CHROMAT_FILE:
MSMg01no335_g06.g1 PHD_FILE: MSMg01no335_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:08 2005
(424 letters)
>mm_chr3_36015382_36016205
Length = 824
Score = 690 bits (357), Expect = 0.0
Identities = 412/439 (93%), Gaps = 15/439 (3%)
Strand = Plus / Plus
Query: 1 tactttggtcactttatattttactgtgtccatacagaagtaggactacaactcttaatc 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tactttggtcactttatattctactgtgtccatacagaagtaggactacaactcttaatc 245
Query: 61 cagcggagaggcgcacacagtctagagcacacttgatctgagcgtcacaacgcagaggag 120
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 246 cagtggagaggcgcacacagtctaaagcacacttgatctgagcgtcacaacgcagaggag 305
Query: 121 gaagataaacccgagcaagcacacctgtctgctgcaggtctactcctgctgtcaggtagt 180
|||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 306 gaagataaacccgagcgagcacacctgtctgctgcaggtctgctcctgccgtcaggtagt 365
Query: 181 aataaggtta--------cca-------ttcaagtggggattggctcattttcaggattt 225
||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 366 aataaggttgggtttgttccaatggtaattcaagtggggattggctcattttcaggattt 425
Query: 226 acttaaaggtctcttctaagtcattcaaagcccccagtccatgcatgtgtcccacttagc 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acttaaaggtctcttctaagtcattcaaagcccccagtccatgcatgtgtcccacttagt 485
Query: 286 ggacagatgagtaatctaaccccaccaagtttatttcagtattttgatatttcaataata 345
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 486 ggacagatgagtaatctaaccccaccgagtttatttcagtattttgatatttcaataata 545
Query: 346 agctgcttctgaagattttttaagacgtctgttctctattaaaataagatagaacctcac 405
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 546 agctgcttctgaagattttttgagatgtctgttctctattaaaataagatagaacctcaa 605
Query: 406 aatatgaatgtgaacatta 424
|||||||||||||||||||
Sbjct: 606 aatatgaatgtgaacatta 624
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
