BAC Information

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BAC

Clone NameMSMg01-335G11
Chromosome3 (Build37)
Map Location 144,941,220 - 144,941,641
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream geneCol24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335G11.T7 (MSMg01no335_g11.b1)MSMg01-335G11.TJ (MSMg01no335_g11.g1)
ACCAG450667AG450668
length713735
length of high quality
(start - end)
89 (314 - 402)422 (79 - 500)
definitionCHROMAT_FILE: MSMg01no335_g11.b1 PHD_FILE: MSMg01no335_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:09 2005CHROMAT_FILE: MSMg01no335_g11.g1 PHD_FILE: MSMg01no335_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCGCTATACGACTCACTAAGGTTACAGAATACGCGGAATTCAGGCCCA
TTCCCAAACAGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAA
GTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACA
AGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAG
CCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAG
GAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAG
TGACTTTTTTTATTCCACCAGAGAACTCCTAAACCTGATAAACAGCTTCG
GTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTC
TACCAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTC
TCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTAACTAAGGA
AGTGAAAGATCTGTATGATAAAAACTTCTAGTCCCTGAAGAAAGAAATCA
CTGAAGATCTCCGAAGATGGAAAGATCTCCCATGTTCATGGATTGTCAGG
ATCAATACTGTAAACATGGCTACCTTGCCCAATTTTTTCTTCCGAATCCA
TGCCCCCCCCCCTCTAATTCCATCTTCCTTTTTCCCCTGAACTTCAACAA
TCTTCTCCGCCCT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTAAATCTCGTGTACAGAAGACAAGAA
TAATTCTGGTTTCTATCCTAATTCATTTTCCTTAATTTATTATCCATGTA
TTCACATTAAGTCATTAAAAATAAAACTGGAATGCACAGACACTTCCTCA
CACACAGGGAAAATTGTCTTCCAACTGTCTTACTAATGCCGGTAAGTTCT
CTCTCTCGTCTTACCAGGACCAGGATGTTTTGGTCATTAAGTCTGAGTCT
TTCAACATGCATTAATTATAATAAAATCATAGTTATTGGCTTTTATTCCA
AAAACTATTTGCAGCAAATTTTGACTGGGATATGCCTAACCCTTGACTTG
GAAAAGCCCTGAAGCTCCACGTATTTCTCTTTAATGAAGTCAACTAACTT
TACAAACCTCAAGTACCAAACAGCTAAAGAACTCTCATGCTCTGGGTAAT
TCATCTTGTTTTCAAATGAGACATTACTTTTCCCCCTAGTCATTAAAAAG
GATAGTTAGCTTGATAGCAAATTGTCCCATTGAACAGACGGTTTCCCTGG
GACTATAAAAGTTTCACATTCTATATCATCTTTAGGACCCGGCAATGAAC
ATTTCTGATCTTACCCAACTTCTTTTTATTAACCATTTTACTTTGTTTAC
ATTTCCAATGACATCCCTTTTTCTCAGATTCACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_g11.g1 MSMg01no335_g11.g1 CHROMAT_FILE:
MSMg01no335_g11.g1 PHD_FILE: MSMg01no335_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:09 2005
         (422 letters)



>mm_chr3_144941020_144941841
          Length = 822

 Score =  777 bits (402), Expect = 0.0
 Identities = 417/422 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcgtgtacagaagacaagaataattctggtttctatcctaattcattttccttaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcgtgtacagaagacaagaataattctggtttctatcctaattcattttccttaattt 260

                                                                       
Query: 61  attatccatgtattcacattaagtcattaaaaataaaactggaatgcacagacacttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attatccatgtattcacattaagtcattaaaaataaaactggaatgcacagacacttcct 320

                                                                       
Query: 121 cacacacagggaaaattgtcttccaactgtcttactaatgccggtaagttctctctctcg 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 cacacacagggaaaattgtcttccaactgtcttactaatgctggtaagttctctctctcg 380

                                                                       
Query: 181 tcttaccaggaccaggatgttttggtcattaagtctgagtctttcaacatgcattaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttaccaggaccaggatgttttggtcattaagtctgagtctttcaacatgcattaatta 440

                                                                       
Query: 241 taataaaatcatagttattggcttttattccaaaaactatttgcagcaaattttgactgg 300
           ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagaaaatcatagtcattggcttttattccaaaaactatttgcagcaaattttgactgg 500

                                                                       
Query: 301 gatatgcctaacccttgacttggaaaagccctgaagctccacgtatttctctttaatgaa 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatatgcctaacccttgacttgaaaaagccctgaagctccacgtatttctctttaatgaa 560

                                                                       
Query: 361 gtcaactaactttacaaacctcaagtaccaaacagctaaagaactctcatgctctgggta 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcaactagctttacaaacctcaagtaccaaacagctaaagaactctcatgctctgggta 620

             
Query: 421 at 422
           ||
Sbjct: 621 at 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)