GGGAGCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCCCAAATTCTTCTCTACTTATGAGACAATCCTCTTT
AAAGACCCTCATTTCTCAATATAAACTCATTCTTCTTAAAGTAAGAATTC
AACACATGTTTAAGGGTTAGTTAACAGTATGGCCCAAACTAAGTTTCTGA
GGCTGAAGAGGCTGGAGGCACCCAGTTCTGTCCTAGTTTCTAATGCCTTA
GTTGTCTCCTCCACCCCAATTCCTCTGCTGAGTCACTCCTCGGGAACTGT
CTAGGAACAGTAGCTGGCAAGGATAACTGCTCACAGCTGATTTGTCTCCC
GCACGTTAGTAGATACACACACTGTGTCCACACAATGGGTGAAATGGCTA
GGAAAGAAAAAAGCACCCCTGTGATCACAGATCTTCTGCCAAACATTGTC
AGGTGTTATGCACGTGGCAGCTAAGAACCCAAAACCCACCAGGCCTCCAT
TTACATCCATGAGAAGAAGTGCAGCAGGGGCTGGGGAGTCAACAGGAATC
AAGCAAGAGCCTCACTTCCTTTGCCTGCCCAACAGGGAGCGTGAGACTCA
AAGGAGATAATGAAGTTTGTGGGTCCGAGAGGCGGTAAAGCACCAGGCTG
TTATACTAAGAGTCACTAAGTCATCCTTCCTGCCCCTAACCTGCTGATTC
TCTGTCCAAAAGTGATCCCTCCTCATTTGC

TTTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGATTAGTTCTAATAACTGT
GGCAGAGTTTTTAAAGAGCTTTTAATTTGGAAGATCATTTCTAGTTCACA
GAGTAGTGATAACTAGACTTTTTTTTTTCAATTTAGTAATCTTTATTTCT
TGCTTAATTTCACTGGCTTGGACTTATGACACCATTTTGGATAAAAGTAG
GCATTTAGGCATCTTGTTTGATTTCAGATCTTCAAAGAGAAATCTTATAT
CTTTTCCCATTCAACACAATTTTAATTTTTGGCTTAGCATAAACAACTTT
TATTGGGTTAAAATGTATTCCTTGTATACTAAATCTGCTCTACATATTTC
TATTGTACTGAATTGAATTCTTAGTTCTTTTTCTGCATCAGTTAAGATAA
ACATGTGGATATTTCTGTTTGATCTAATCCTGTTGTATTACTTAGTGTAT
ATTGATATCATACCTCCTCCTTGGGGATGAATATCACTTTGTCACTAATG
ACACCCCTATTATTCATTTTATCTGATAATAGCATTACGTCATTGTCTCC
TCCCTGTAATTTCGACTTCTCACCGACATGATTATCTTTGTCTTAATAAC
ATCTGTGTGCAACAATACTTCCTCCTGTCACTAACTATAATCGTTTCTTA
CCGGTCTCTTTCGTTACTTCTTGCGCATCCCTCACTATTGTTGCCACATT
GCTCACACTGGCTTTCTCTTCTTGTATTC

Query= MSMg01no335_k04.b1 MSMg01no335_k04.b1 CHROMAT_FILE:
MSMg01no335_k04.b1 PHD_FILE: MSMg01no335_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:28 2005
         (608 letters)



>mm_chr3_34192686_34193691
          Length = 1006

 Score = 1083 bits (560), Expect = 0.0
 Identities = 592/604 (98%), Gaps = 4/604 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattctcccaaattcttctctacttatgaga-caatcctctttaaagaccctcatttctc 64
           ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 806 aattctcccaaattcttctctacttatgagatcaattctctttaaagaccctcatttctc 747

                                                                       
Query: 65  aatataaactcattcttcttaaagtaagaattcaacacatgtttaagggttagttaacag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aatataaactcattcttcttaaagtaagaattcaacacatgtttaagggttagttaacag 687

                                                                       
Query: 125 tatggcccaaactaagtttctgaggctgaagaggctggaggcacccagttctgtcctagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tatggcccaaactaagtttctgaggctgaagaggctggaggcacccagttctgtcctagt 627

                                                                       
Query: 185 ttctaatgccttagttgtctcctccaccccaattcctctgctgagtcactcctcgggaac 244
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 626 ttctaatgccttagttgtctcctctaccccaattcctctgcttagtcactcctcgggaac 567

                                                                       
Query: 245 tgtctaggaacagtagctggcaaggataactgctcacagctgatttgtctcccgcacgtt 304
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgtctaggaacagtggctggcaaggataactgctcacagctgatttgtctcccgcacgtt 507

                                                                       
Query: 305 agtagatacacacactgtgtccacacaatgggtgaaatggctaggaaagaaaaaagcacc 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 506 agtagatacacacactgtgtccacacaatgggtgaaatgactaggaaagaaaaaagcacc 447

                                                                       
Query: 365 cctgtgatcacagatcttctgccaaacattgtcaggtgttatgcacgtggcagctaagaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cctgtgatcacagatcttctgccaaacattgtcaggtgttatgcacgtggcagctaagaa 387

                                                                       
Query: 425 cccaaaacccaccaggcctccatttacatccatgagaagaagtgcagcaggggctgggga 484
           ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct: 386 cccaaaacccaccaggcctccatttacatccatg---agaagtgcagcaggggctgggga 330

                                                                       
Query: 485 gtcaacaggaatcaagcaagagcctcacttcctttgcctgcccaacagggagcgtgagac 544
           |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 329 gtcaacaggaatcaagcatgagcctcacttcctttgcctgcccaacagggagtgtgagac 270

                                                                       
Query: 545 tcaaaggagataatgaagtttgtgggtccgagaggcggtaaagcaccaggctgttatact 604
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tcaaaggagataatgtagtttgtgggtccgagaggcggtaaagcaccaggctgttatact 210

               
Query: 605 aaga 608
           ||||
Sbjct: 209 aaga 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1006
Length adjustment: 10
Effective length of query: 598
Effective length of database: 996
Effective search space:   595608
Effective search space used:   595608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)