BAC Information

Click to search

BAC

Clone NameMSMg01-335O08
Chromosome3 (Build37)
Map Location 88,466,331 - 88,466,676
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4
Downstream gene2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335O08.T7 (MSMg01no335_o08.b1)MSMg01-335O08.TJ (MSMg01no335_o08.g1)
ACCAG451044AG451045
length757738
length of high quality
(start - end)		319 (70 - 388)315 (76 - 390)
definitionCHROMAT_FILE: MSMg01no335_o08.b1 PHD_FILE: MSMg01no335_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:49 2005CHROMAT_FILE: MSMg01no335_o08.g1 PHD_FILE: MSMg01no335_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTCTTTAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCAGATGTTTGCCCACTAGCCACTTCCCCAATTGGGCCTGGGG
TAGCTGGGGAGGATTTAGGAGTGCCCAGCCTTTGGTGTGTGTGTGTGTGT
GTGTGTGTGTTCCATTCTTGAATCCAGATAGCTGGGCCGGTGCATGCATT
TGACCCATGGGAGCCAAAGCAGTGTAGCTAAACTCTCCTCAACAAAACCT
GGTAGAGCATCAAAACATATATATTTACTAGGGATAAATATGGCAAAAGA
TATTTAATATCTTAATATGTGCTTAAAACTACAAAGCTGAGAGACTTCAG
AGATGGCTCCTATAGAGGACCTCGGTTTGATGCCCAGCATCCACATCAGA
TGTCTCATAACTGCCTGTATCTTTAGTTCCAGGGGATCCAGTGTCTCTGG
CCTCTGAAGGCACTTGCTCGTGTATAGAGTACAAACACTTACGTATGCAC
TTATACTTACTCAATCATCATTAATATAATATGTGTCTTTTACATCTATC
TTTACTGCCATTAATTTTGATCCTTTATATCTAAACTCCATATGATTCTC
TAATCTTACTCTTTTATTTTACCCCATTTTTTTATAAAACTCTTTTTAAG
CAATTTTTTCTCTCCCAAATTTTCTTTATTTCCCCACCTTATGCACTCGT
GTTACCTCTCCTTCCTTACTCCCTTTTCTTCTATTTCCTCTCTACTCTTT
CTTTCTT

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTGCCCTCTTCTGACCTCCACAGG
CCCTGCATAACCATGGTGCACAAATGCTCAGGCACACACAGATGCACATA
TAAATGACAAAGCCTTTAAAACGGAGCCGGGCAGTGGTGGCGCACGCCTT
TAATCCCAGCACTCTGGAGGCAGAGGCAGGCAAATTTCTGAGTTCGAGGC
CAGACTGGTCTACAGAGTGAGTTCCAGGATGGCCAGGTCTACACAGAGAA
ACCCTGTCTCAAAAAACCTTTTTACAACAACAACCCCGAATTATTTTTGA
AATAGTGAATGAATAAGGAAGGGTTCTAGGGACAGGGTTCAGTGAGACAC
CAGTGTCTAACACTGAAGGAAGGAGGCAGATAAGCAGGGAGAGGAAGACA
GACAGGAGTCCATGACTGAAAGTTAGTAATTTAGGACTAATTCCAAAAAC
CCAGAACTCATGCCCCAACCCTGCTGTACAACACCACAGTAAGCCTACCA
TCTTCTCAAACACCTGGGCTACCAGGATAAGGGATAAAACACTTTCATAA
CACAAGCCTCCCATCCCCGATAGCTGACAGGCAAAGGAGTCTCATTGTAT
TTTTCCCCACTCTCTTTTTTTTCATTTTTACCTCATTTTTTTACTTACCC
CCTGTTCTATCCTCACTTTCTTTGATTCTCATCCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_o08.b1 MSMg01no335_o08.b1 CHROMAT_FILE:
MSMg01no335_o08.b1 PHD_FILE: MSMg01no335_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:49 2005
         (319 letters)



>mm_chr3_88466161_88466876
          Length = 716

 Score =  443 bits (229), Expect = e-129
 Identities = 305/351 (86%), Gaps = 37/351 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccactagccacttccccaattgggcctggggtagctggggaggatttaggagtgcccagc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 171 ccactagccacttccccaattgggcctggggtagctggggaggatttaggggtgcccagc 230

                                                                       
Query: 61  cttt--ggtgtgtgtg----------------------------tgtgtgtgtgtgtgtg 90
           ||||  ||||||||||                            ||||||||||||||||
Sbjct: 231 ctttggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtg 290

                                                                       
Query: 91  ttccattcttgaatccagatagctgggccggtgcatgcatttgacccatgggagccaaag 150
           |||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||| 
Sbjct: 291 ttccattcttgaatccagatagctgggcaggtacatgcgtgtgacccatgggagccaaac 350

                                                                       
Query: 151 cagtgtagctaaactctcctcaacaaaacctggtagagcatcaaaacatatatatttact 210
           |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 351 cagtgtagctaaactctcctcaacaaaatctgctagagcatcaaaacatatatatttact 410

                                                                       
Query: 211 agggataaatatggcaaaagatatttaata-tcttaatatgtgcttaaaactacaaa-gc 268
           |||||||||||||||||||||||||||||| |    || |||||||||||||||||| ||
Sbjct: 411 agggataaatatggcaaaagatatttaatagt----at-tgtgcttaaaactacaaaagc 465

                                                              
Query: 269 tgagagacttcagagatggctcctatagaggacctcggtttgatgcccagc 319
           ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 466 tgagagacttcagagatggctcctacagaggacctcggtttgatgcccagc 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 716
Length adjustment: 9
Effective length of query: 310
Effective length of database: 707
Effective search space:   219170
Effective search space used:   219170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |