Query= MSMg01no335_p16.b1 MSMg01no335_p16.b1 CHROMAT_FILE:
MSMg01no335_p16.b1 PHD_FILE: MSMg01no335_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:55 2005
(563 letters)
>mm_chr3_107975449_107976411
Length = 963
Score = 990 bits (512), Expect = 0.0
Identities = 545/564 (96%), Gaps = 14/564 (2%)
Strand = Plus / Plus
Query: 1 cacacgttctctagttcaaataaatgcattccaaccacagagagctctaatggttctaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cacacgttctctagttcaaataaatgcattccaaccacagagagctctaatggttctaat 259
Query: 61 agagccagtaattttaatgttaatgctagatcaatttaaagaaaaaaaaa-tgagacaag 119
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 260 agagccagtaattttaatgttaatgctagatcaatttaaagaaaaaaaaaatgagacaag 319
Query: 120 gtctcactatgcagcccaggctggcctggcatttgctctgtagaccggtttagactggtt 179
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 320 gtctcactatgcagcccaggctggcctggcatttgttctgtagaccggtttagactggtt 379
Query: 180 aattatatgttgatctgagaaacacacgcttgtctatctgctccccatttttgaaggtca 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 380 aattatatgttgatctgagaaacacacacttgtctatctgctccccatttttgaaggtca 439
Query: 240 tcatcctctcctgcttcctatcttacccgctcagatgacaaaatacaggctccttgccac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcatcctctcctgcttcctatcttacccgctcagatgacaaaatacaggctccttgccac 499
Query: 300 acggaaacagaagctcaagctatgtcttccaaggactgactggttgtttaccaaatagtt 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 500 acggaaacagaagctcaagctatgtcttccaaggactgactcgttgtttaccaaatagtt 559
Query: 360 tcttctttacctcctgtgtacacagcttggctacatttcccaaggtcccctttggtcaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcttctttacctcctgtgtacacagcttggctacatttcccaaggtcccctttggtcaga 619
Query: 420 ggtactcatatcttagacagggaaatgtggcagaaatgatgaacaccagttgcaagcttg 479
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 620 ggtactcatatcttagacagggaaatgtggcagaaatgatgaacgccagttgcaagcttg 679
Query: 480 acttctaaaaccttccatataatcgggcatgctccttgtttcttcctgcagctgccaact 539
||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 680 acttctaaa-------------tcgagcatgctccttgtttcttcctgcagctgccaact 726
Query: 540 gaaggcagagggtccaggagagac 563
||||||||||||||||||||||||
Sbjct: 727 gaaggcagagggtccaggagagac 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_p16.g1 MSMg01no335_p16.g1 CHROMAT_FILE:
MSMg01no335_p16.g1 PHD_FILE: MSMg01no335_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:56 2005
(496 letters)
>mm_chr3_108190296_108191193
Length = 898
Score = 924 bits (478), Expect = 0.0
Identities = 493/498 (98%), Gaps = 2/498 (0%)
Strand = Plus / Minus
Query: 1 agttctgtacatcagctgtcctcctggcctttcc-aacagaccagtatccagtcaggaag 59
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 698 agttctgtacatcagctgtcctcctggcctttccaaacagaccagtatccagtcaggaag 639
Query: 60 acatgtcctagagaactgagccggcgggctcctaaggccgctcatatgggaatggccagt 119
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 acatgtcatagagaactgagccggcgggctcctaaggccgctcatatgggaatggccagt 579
Query: 120 gaaccgtggtagaagatcaagctctctagtcctgaccacaagatggaaggagacagatag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gaaccgtggtagaagatcaagctctctagtcctgaccacaagatggaaggagacagatag 519
Query: 180 gtcactctgcctgcatttattattttgtttgtgagtttctccacgggcagatgacctctg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gtcactctgcctgcatttattattttgtttgtgagtttctccacgggcagatgacctctg 459
Query: 240 cccctctcttcttctttcagggcagggtagggtggggttgagtcccctcaagctcaaggc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cccctctcttcttctttcagggcagggtagggtggggttgagtcccctcaagctcaaggc 399
Query: 300 atccgatcccccatagtctctacttcagaggtcagccctggaggcatctcttcctcccat 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 acccgatcccccatagtctctacttcagaggtcagccctggaggcatctcttcctcccat 339
Query: 360 ctctgggcacagagctactggagttagggaccactggcagaggagagtacagactttgat 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 338 ctctgggcacagagctactggagttagggaccactggcagaggagagtccagactttgat 279
Query: 420 ggctaagatggtagtggcttgctattgagtctttgtttgctgacgtgctcttcttacctg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggctaagatggtagtggcttgctattgagtctttgtttgctgacgtgctcttcttacctg 219
Query: 480 aaagaag-gggggggggg 496
||||||| ||||||||||
Sbjct: 218 aaagaagagggggggggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 898
Length adjustment: 10
Effective length of query: 486
Effective length of database: 888
Effective search space: 431568
Effective search space used: 431568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
