Query= MSMg01no336_a16.b1 MSMg01no336_a16.b1 CHROMAT_FILE:
MSMg01no336_a16.b1 PHD_FILE: MSMg01no336_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:00 2005
(515 letters)
>mm_chr3_128775397_128776311
Length = 915
Score = 917 bits (474), Expect = 0.0
Identities = 507/528 (96%), Gaps = 18/528 (3%)
Strand = Plus / Minus
Query: 5 gaattcattctttctggatccgatttgtgatcagtcgcattgacaggatctcactcatta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gaattcattctttctggatccgatttgtgatcagtcgcattgacaggatctcactcatta 569
Query: 65 atggattaacaaatgactttacttcaacgactaggtaccataagtaagctaaaaccttgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 atggattaacaaatgactttacttcaacgactaggtaccataagtaagctaaaaccttgg 509
Query: 125 ctatctacaacagttagttgagtcccagattctgtttaaactagggtcagtgtgctctgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ctatctacaacagttagttgagtcccagattctgtttaaactagggtcagtgtgctctgt 449
Query: 185 atctgcacttctaacttaaaaacctctttttagtttctttgtttttatgacacatcttca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atctgcacttctaacttaaaaacctctttttagtttctttgtttttatgacacatcttca 389
Query: 245 tgagtcatgagtcagtaggtcggaaggattatcataggtgggtgactgactagacaatgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgagtcatgagtcagtaggtcggaaggattatcataggtgggtgactgactagacaatgc 329
Query: 305 ttggtcataaataatgtagtttgtctttatgccatttttacttctaccttggaaggtaac 364
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttggtcataaataatatagtttgtctttatgccatttttacttctaccttggaaggtaac 269
Query: 365 ttccgtgggacttcctttttcaaccacagttacacactccatcctccttggaaaagtttg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttccgtgggacttcctttttcaaccacagttacacactccatcctccttggaaaagtttg 209
Query: 425 ----------------tgcttgtcattgatcagtgttttagctttgttctctgtgtggca 468
||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 208 tgctcaaagaaggacctgcttgtcagtgatcagtgttttggctttgttctctgtgtggca 149
Query: 469 tttctgtatactgaagcagaanaaaa-aaacattttctatttacaaat 515
||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 148 tttctgtatactgaagcagaa-aaaagaaacattttctatttacaaat 102
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_a16.g1 MSMg01no336_a16.g1 CHROMAT_FILE:
MSMg01no336_a16.g1 PHD_FILE: MSMg01no336_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:00 2005
(538 letters)
>mm_chr3_128616881_128617818
Length = 938
Score = 1025 bits (530), Expect = 0.0
Identities = 536/538 (99%)
Strand = Plus / Plus
Query: 1 acatttgaacctaaactgtcatatatcccttatgtcaattgtgtttctaccctgaattac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatttgaacctaaactgtcatatatcccttatgtcaattgtgtttctaccctgaattac 260
Query: 61 taaacataaatttgttttcagagccacgatataaacatagccatgagccacaggtcatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaacataaatttgttttcagagccacgatataaacatagccatgagccacaggtcatgc 320
Query: 121 tgtgggagcgatattcacctgaaatgccctctgctttggacattgtatcggggaccaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgggagcgatattcacctgaaatgccctctgctttggacattgtatcggggaccaacc 380
Query: 181 ccacacaccacgtatcgcttccgctgcctcccccacaggctgttatctagtgtttatctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacacaccacgtatcgcttccgctgcctcccccacaggctgttatctagtgtttatctg 440
Query: 241 caaaatctggacaggaactgtactgaagagctcagttcaccttcctttgttgaagaaagg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaatctggacaggaactgtactgaagagctcagttcaccttcctttgttgaagaaaga 500
Query: 301 acactgcatttgtcatcagtgtggtttgtcaacaggcttagagacaatatggagggctcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 acactgcatttgtcatcagtgtggtttgtcaacaggcttagagacaatatggaggactcc 560
Query: 361 atatttggttcagtgattttggtctaaacagtgatggagatctttgtatgcttcaggaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatttggttcagtgattttggtctaaacagtgatggagatctttgtatgcttcaggaag 620
Query: 421 gacgtgtccctaaatgaattataatatggtcccatcattatcactgctcctagccccttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacgtgtccctaaatgaattataatatggtcccatcattatcactgctcctagccccttc 680
Query: 481 ctggggacctcagaggttttaataaactataaatatgttcatataccattcttatagc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggggacctcagaggttttaataaactataaatatgttcatataccattcttatagc 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
