Query= MSMg01no336_b18.b1 MSMg01no336_b18.b1 CHROMAT_FILE:
MSMg01no336_b18.b1 PHD_FILE: MSMg01no336_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:05 2005
(543 letters)
>mm_chr3_72679107_72680050
Length = 944
Score = 901 bits (466), Expect = 0.0
Identities = 519/542 (95%), Gaps = 12/542 (2%)
Strand = Plus / Minus
Query: 5 gaattcaatatttatatatccaggggacataaaaatgttatttgtatattatttaatttc 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gaattcaatattcatatatccaggggacataaaaatgttatttgtatattatttaatttc 497
Query: 65 agccctggagtgagattagaaaatacctataccctttatttaagtctgttcagttccttc 124
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 496 agccctggagtgaaattagaaaatacctataccatttatttaagtctgttcagttccttc 437
Query: 125 atatagttacaaataatacaaaattcattatttctgttttttaaggaactgtacagtctt 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 436 atatagttacaaataatacaaaattcattatttctgttttttgaggaactgtacagtctt 377
Query: 185 gtaattgtaacagtcaaggtgttacagtttaattttaaatgctcattgaaagaatttatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 376 gtaattgtaacagtcaaggtgttacagtttaattttaaatgctcattgaaataatttatt 317
Query: 245 tagcttatttctttaggctctgttagacaa---tattattaggccattattgtttttatt 301
|||||||||||||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct: 316 tagcttatttctttaggctctgataga--agcctattattaggccattattgtttttatt 259
Query: 302 cctttccagtaagaatacaacatgatccttccctctactttcaatcttcctttgaaaaca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cctttccagtaagaatacaacatgatccttccctctactttcaatcttcctttgaaaaca 199
Query: 362 aaaacaaaaacaaaaaaaaaaaaacactaatttttccagccctgcagtacacagttgatg 421
|||| ||||||||| ||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 198 aaaa-----acaaaaaaacaaa--cactaatttttccagtcctgcagtacacagttgatg 146
Query: 422 ctcaaaaggacttatgtagcttttacatttaatattgaataaacttcagaaaatcttttc 481
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 145 ttcaaaaggacttatgtagcttttacatttaatagtgaataaacttcaggaaatcttttc 86
Query: 482 caaggattgaaattttatatatgcaaattataataaaaacatattcttcaaacccacact 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 caaggattgaaattttatatatgcaaattataataaaaacatattcttcaaacccacact 26
Query: 542 ga 543
||
Sbjct: 25 ga 24
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 944
Length adjustment: 10
Effective length of query: 533
Effective length of database: 934
Effective search space: 497822
Effective search space used: 497822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_b18.g1 MSMg01no336_b18.g1 CHROMAT_FILE:
MSMg01no336_b18.g1 PHD_FILE: MSMg01no336_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:05 2005
(513 letters)
>mm_chr3_72533922_72534837
Length = 916
Score = 851 bits (440), Expect = 0.0
Identities = 496/516 (96%), Gaps = 3/516 (0%)
Strand = Plus / Plus
Query: 1 tttgagacgcagaatgacgtaagcctaaaatgacagcggctcaagcactgggcagctctg 60
||||||||||| | ||| ||||||| |||||||||| ||| |||||||||||||||||||
Sbjct: 201 tttgagacgcatagtgatgtaagcccaaaatgacagaggcacaagcactgggcagctctg 260
Query: 61 tatcatccctcctggaatattaatgcaatttagcaaaacatacccacattatgccttatg 120
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 261 tatcatccctcctggaatattaatgcactttagcaaaacatacccacattatgccttagg 320
Query: 121 ttttgtggtaattggttcccttggaagtaatatttaaaagatgttacataaagtttttat 180
||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ttttgtgctaatcagttcccttggaagtaatctttaaaagatgttacataaagtttttat 380
Query: 181 tgcatattatgaatctgtaggccagaattaggtagtaatgtggtatgaaagaatgtgagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatattatgaatctgtaggccagaattaggtagtaatgtggtatgaaagaatgtgagg 440
Query: 241 ggttcagaggtgcataaatctgctgttcagtaaatgcatactcgttctcataggacctcc 300
|||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||
Sbjct: 441 ggttcagaggtgcataaatccgctgttcagtaaatgcatgctcgttcccataggacctcc 500
Query: 301 tagggagcttatatagcacatttcaggactgaccagccatcaggagcacaaaagagatta 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagggagcttatacagcacatttcaggactgaccagccatcaggagcacaaaagagatta 560
Query: 361 cctatccccagtgtaaggatttgtgcaaggagcatatctgtaaggagctgagaaaagcag 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 cctatccccagtgtaaggatttgtgcatggagcatatctgtaaggagctgagaaaagcag 620
Query: 421 ---atgtcctcacctaatggactacttacctcaatggcaatgtcccagggtaatttgatg 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagatgtcctcacctaatggactacttacctcaatggcaatgtcccagggtaatttgatg 680
Query: 478 agaaagggtctaccatgagctttagaactaactggt 513
||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaaagggtctaccatgagctttagaactaactggt 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 916
Length adjustment: 10
Effective length of query: 503
Effective length of database: 906
Effective search space: 455718
Effective search space used: 455718
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
