Query= MSMg01no336_c03.b1 MSMg01no336_c03.b1 CHROMAT_FILE:
MSMg01no336_c03.b1 PHD_FILE: MSMg01no336_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:07 2005
(186 letters)
>mm_chr3_138091136_138091721
Length = 586
Score = 315 bits (163), Expect = 9e-91
Identities = 175/179 (97%)
Strand = Plus / Plus
Query: 5 gaattcatggtttaccttaacttcataacaagaaccatctcaaaagaaaaggaaaaaatt 64
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattcatggcctaccttaacttcataacaagaaccatctcaaaagaaaaagaaaaaatt 264
Query: 65 tcaagtggtattgaaatgaaccaatcaactgagagtaacaaaagagaaactttggtctaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaagtggtattgaaatgaaccaatcaactgagagtaacaaaagagaaactttggtctaa 324
Query: 125 ttaagacaatttcttagctagtgtggataataatcttgaattttccttatgaagaaaaa 183
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 ttaagacaatttcttagctagtgtggataataatcttaaattttccttatgaagaaaaa 383
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space: 102884
Effective search space used: 102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no336_c03.g1 MSMg01no336_c03.g1 CHROMAT_FILE:
MSMg01no336_c03.g1 PHD_FILE: MSMg01no336_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:07 2005
(506 letters)
>mm_chr3_138232431_138233332
Length = 902
Score = 913 bits (472), Expect = 0.0
Identities = 496/506 (98%), Gaps = 4/506 (0%)
Strand = Plus / Minus
Query: 1 aaataagaatgcccaagcagtaggtaaaaagttattggagaagacagacatataacaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aaataagaatgcccaagcagtaggtaaaaagttattggagaagacagacatataacaaag 595
Query: 61 ggctaccctacagattgcctgcaaggtgcaaagaaaagtacaaggtcacaatggagtccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 594 ggctaccctacagattgcctgcaaggtgcaaagaaaagtacaaggtcacaatggaatccc 535
Query: 121 tccaactccattgtcccagccaagggttcagagtatgagcttgctggtgacatactatgt 180
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 534 tccaactccattgtcccagccaaaggttcagagtatgagcttgctggtg----actatgt 479
Query: 181 gacaggcagcacctactaagcagcttaatgggaccctttccaagccttaggctatacatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gacaggcagcacctactaagcagcttaatgggaccctttccaagccttaggctatacatg 419
Query: 241 tgacctgtggaaatgcatttggaatgattgagcagcaagttagtgaatcaggaagatgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tgacctgtggaaatgcatttggaatgattgagcagcaagttagtgaatcaggaagatgct 359
Query: 301 aggtaacatgagatgaaggagctgctgcggcttaaagagatcagaggaaaggagattctg 360
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 358 aggtaacatgagatgaaggagctgctgcagcttaaagagaccagaggaaaggagattctg 299
Query: 361 aaaacatagcgtcaaccgccaatagcagccacacccagtgaccttggcaagattcatggc 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 298 aaaacatagcgtcaaccgccaatagcagccacacacagtgaccttggcaagattcatggc 239
Query: 421 tactcttatttgtttctaaatagttctagaatgtgtgtctgaacatggtggaagatgcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tactcttatttgtttctaaatagttctagaatgtgtgtctgaacatggtggaagatgcct 179
Query: 481 gtaatcccagcagtcaagagactgga 506
|||||||||||||||||||||||||
Sbjct: 178 ataatcccagcagtcaagagactgga 153
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 902
Length adjustment: 10
Effective length of query: 496
Effective length of database: 892
Effective search space: 442432
Effective search space used: 442432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
