BAC Information

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BAC

Clone NameMSMg01-336E09
Chromosome3 (Build37)
Map Location 66,389,986 - 66,390,495
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
Downstream geneLOC625115, Shox2, Rsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336E09.T7 (MSMg01no336_e09.b1)MSMg01-336E09.TJ (MSMg01no336_e09.g1)
ACCAG451333AG451334
length743753
length of high quality
(start - end)		539 (41 - 579)510 (70 - 579)
definitionCHROMAT_FILE: MSMg01no336_e09.b1 PHD_FILE: MSMg01no336_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:18 2005CHROMAT_FILE: MSMg01no336_e09.g1 PHD_FILE: MSMg01no336_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGA
AGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CGCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTC
AGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTC
CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACT
TAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTT
CTACACGATAACAACCAGTTGTTATCTTCTTTCTCACTGGCCTCAGTGAG
ATTGAATCAATGTTGTTCCTTTCCGTCCTCTTTATCATGATTCTCTGCCT
TACTTTGTTCAGAATCCAGACGCATGTGTTAAACCTCTTNAACCATGACT
CAAACCACCATTACCACCACCACCAAACCCAAAAAACAAAAAGCAATTCT
TCCTTAGGGNTGCTTTTCTTCCCAGACATCTTGTCTTANCACTGGGTAAA
AGTAAGTAACACAGAGGGCTTTTTGAAGGCGAACCCCGGACCT

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAACTCCATCAAGCTGTGGTCAGTCTGGAA
GTGTTCATCCAGAAACTTACTGAGTTGATGAAACTAAAGAAGTTTGGGGG
AGTTACTTTGAACATGATGGTGTGCAATTGTAGACCTTAACTAGTTTGTG
GATCTCAGAAATAAATAAATAAAAATAACCACGTATTCCATATCAGAGGC
CCACAATCAATCCAATATCTTGCTACTCTAGGTCTACTTAACTGTACAGC
ACAGACCAAGTGAATCATATCTCAGGATTTGTGAAGTGAGTTTTCACATG
TACAGAAGTATCGGAGCTTTAGGAACAATTTGCATTCCTTTACAGTAGCA
TGAGAGGAACATGTCACAGGAGCTCTAAGCAACATGGCTCATGCCCAAAC
TGTCAACTACAGTTATTTTAAGGCAGCACCACTTGAAAAATTAGGTATCC
AATTTCCGAGACATTCAGAAAATAAATCTTTCAAAACTATTATGACTTCA
GTCACACATGGACACTAAAACCTTTTAGACACAAGAATATTTCTAAAAGA
TGTCAACAATTTCCCACCCTTAAAAAAAAAACTTCCTTTACACACTTTGT
TTTTTCTCAAGNAACTGNNNGNGNGNGTGNGNGNGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_e09.g1 MSMg01no336_e09.g1 CHROMAT_FILE:
MSMg01no336_e09.g1 PHD_FILE: MSMg01no336_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:18 2005
         (510 letters)



>mm_chr3_66389786_66390695
          Length = 910

 Score =  978 bits (506), Expect = 0.0
 Identities = 509/510 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaactccatcaagctgtggtcagtctggaagtgttcatccagaaacttactgagttgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaactccatcaagctgtggtcagtctggaagtgttcatccagaaacttactgagttgat 260

                                                                       
Query: 61  gaaactaaagaagtttgggggagttactttgaacatgatggtgtgcaattgtagacctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaactaaagaagtttgggggagttactttgaacatgatggtgtgcaattgtagacctta 320

                                                                       
Query: 121 actagtttgtggatctcagaaataaataaataaaaataaccacgtattccatatcagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actagtttgtggatctcagaaataaataaataaaaataaccacgtattccatatcagagg 380

                                                                       
Query: 181 cccacaatcaatccaatatcttgctactctaggtctacttaactgtacagcacagaccaa 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 cccacaatcaatccaatatcttgctactctgggtctacttaactgtacagcacagaccaa 440

                                                                       
Query: 241 gtgaatcatatctcaggatttgtgaagtgagttttcacatgtacagaagtatcggagctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaatcatatctcaggatttgtgaagtgagttttcacatgtacagaagtatcggagctt 500

                                                                       
Query: 301 taggaacaatttgcattcctttacagtagcatgagaggaacatgtcacaggagctctaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggaacaatttgcattcctttacagtagcatgagaggaacatgtcacaggagctctaag 560

                                                                       
Query: 361 caacatggctcatgcccaaactgtcaactacagttattttaaggcagcaccacttgaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caacatggctcatgcccaaactgtcaactacagttattttaaggcagcaccacttgaaaa 620

                                                                       
Query: 421 attaggtatccaatttccgagacattcagaaaataaatctttcaaaactattatgacttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attaggtatccaatttccgagacattcagaaaataaatctttcaaaactattatgacttc 680

                                         
Query: 481 agtcacacatggacactaaaaccttttaga 510
           ||||||||||||||||||||||||||||||
Sbjct: 681 agtcacacatggacactaaaaccttttaga 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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