BAC Information

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BAC

Clone NameMSMg01-336E23
Chromosome3 (Build37)
Map Location 140,763,319 - 140,763,752
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC229883, LOC621343, 4930590L14Rik
Downstream genePdha2, Unc5c, LOC100039923, Bmpr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336E23.T7 (MSMg01no336_e23.b1)MSMg01-336E23.TJ (MSMg01no336_e23.g1)
ACCAG451360AG451361
length761746
length of high quality
(start - end)
339 (46 - 384)434 (73 - 506)
definitionCHROMAT_FILE: MSMg01no336_e23.b1 PHD_FILE: MSMg01no336_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:20 2005CHROMAT_FILE: MSMg01no336_e23.g1 PHD_FILE: MSMg01no336_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGGTCTTACCACATTCCCCATCATCCTGAAGCAGCTGGTCTGA
TAGAAAGATGGAATGGCCTTTTGAAGACGCAGTTACAGCGCCAATTAGGT
GGTAACAGCTTGGAAGGCTGGGGCAGAGTTCTTCAGAAGGCAGTATATGC
TTTGAATCAGCGCTCGATATATGGTACAGTTTCACCCATAGCCAGGATTC
ATGGGTCCAGGAATCAAGGGGTGGAAAATGGAATAGTTCCACTTACTATC
ACTCCTAGTGACCCTCTAGGAAAATTTTTGCTTCCTGTCCCCATAACTCT
AGGTTCTGCTGGCCTAGAAGTTTTGGCTCCAGAGAGGGGAGTACTCCTAC
CAGGAGCTACNACAAACATTCCCCATTGACTGGAGCTCAGACTTNCCCCC
TGGTCATTTTGGGCTTCTAATGGCCCTTAAACCAACAGGGCTAAAAAAAG
GAATAACAGTGGTTTAGGAGGGGTGGATAGATCCCAGATAACCATGGGGG
AAATTGGGAATAACCTCTTCCCAATGGGGGGAAAACAGGATTATGTCTGG
GAGTGGAGGAAGACCCCCTTAGGGGGCCCTTATAAAAACCGGGGCCGGGG
GTTAAAGCCCAGGGGAAAAATAAAAAGCCCATTCCACGGGGGGGGAAAAG
GGACCCAACCCCTCCGGAAGGAGGGTTGGGGTATCCTCCCCCAAAAAAAA
CAAAAACTGGT
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTACTGTCCTTAAGCCTTAAATCAAAT
GTCTCTATTTTTCCATTTATCTATTATTTTCATGTGTAAATTATCGTTTG
ATTTGTATTTGTTTGTTTTACTTTAAAATCATTTTTTACAGAAGAGAGAT
GTTTACTAATAGAATCAGCAAGTTTTGGAGAATCAAGTGGCCTCTTCTTT
CCATTATGTATATTCGAATTGTTTCCTTGGAACACAGGAAGATTTTGTAT
CCTTTGGTTATCTTTCCCTCCCTGAGTATGGCTTTACTTCTTTTATGATG
ATATTTTATGCATTGGATTTCACAGAGTGGGCAACAGTCAACATTGATGC
TTTTTCTGATCGATCAAACCAGCTTCCTTTGTTGCTCAGTGGCGACCGGA
TCAGTGCCTTTGCTCAAATAACTGTCGGACAAAATATTACTGAAGTTTTT
AAAATGTATATTCAATTCTGTTTTATACTAATTTGGAGCTTGGGAGGAAG
CTATAAATATGCATTTTGTAATGCTTCCTGACCCCAAGTATTAAGTATAG
ATGCCAGGGTTTATTTTACTCCGGAAGCTACTTGAAAATTCCATGCATTC
CCTGCCAAAAAGTCACTGTTTTGTAAAAAAAAAAAAAATTCTTGGGTAAA
AATTGTCTGGTTAAAACTCCACCCGGAAGGTTCCCCCCTCCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_e23.g1 MSMg01no336_e23.g1 CHROMAT_FILE:
MSMg01no336_e23.g1 PHD_FILE: MSMg01no336_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:20 2005
         (434 letters)



>mm_chr3_140763119_140763952
          Length = 834

 Score =  839 bits (434), Expect = 0.0
 Identities = 434/434 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttactgtccttaagccttaaatcaaatgtctctatttttccatttatctattattttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tttactgtccttaagccttaaatcaaatgtctctatttttccatttatctattattttca 575

                                                                       
Query: 61  tgtgtaaattatcgtttgatttgtatttgtttgttttactttaaaatcattttttacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tgtgtaaattatcgtttgatttgtatttgtttgttttactttaaaatcattttttacaga 515

                                                                       
Query: 121 agagagatgtttactaatagaatcagcaagttttggagaatcaagtggcctcttctttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 agagagatgtttactaatagaatcagcaagttttggagaatcaagtggcctcttctttcc 455

                                                                       
Query: 181 attatgtatattcgaattgtttccttggaacacaggaagattttgtatcctttggttatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 attatgtatattcgaattgtttccttggaacacaggaagattttgtatcctttggttatc 395

                                                                       
Query: 241 tttccctccctgagtatggctttacttcttttatgatgatattttatgcattggatttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccctccctgagtatggctttacttcttttatgatgatattttatgcattggatttca 335

                                                                       
Query: 301 cagagtgggcaacagtcaacattgatgctttttctgatcgatcaaaccagcttcctttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cagagtgggcaacagtcaacattgatgctttttctgatcgatcaaaccagcttcctttgt 275

                                                                       
Query: 361 tgctcagtggcgaccggatcagtgcctttgctcaaataactgtcggacaaaatattactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tgctcagtggcgaccggatcagtgcctttgctcaaataactgtcggacaaaatattactg 215

                         
Query: 421 aagtttttaaaatg 434
           ||||||||||||||
Sbjct: 214 aagtttttaaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)