Query= MSMg01no336_f12.b1 MSMg01no336_f12.b1 CHROMAT_FILE:
MSMg01no336_f12.b1 PHD_FILE: MSMg01no336_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:23 2005
(527 letters)
>mm_chr3_54004911_54005836
Length = 926
Score = 959 bits (496), Expect = 0.0
Identities = 517/524 (98%), Gaps = 1/524 (0%)
Strand = Plus / Minus
Query: 4 ggaattctaccctggcattttcccttctaagctcttgggacatgttcttaacaaaatcct 63
|||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 726 ggaattctacccagg-attttcccttctaagctcttgggatatgttcttaacaaaatcct 668
Query: 64 tccaacccaagaatgacttggtttctgtgccaagaaacagatactgtttctccaggagat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tccaacccaagaatgacttggtttctgtgccaagaaacagatactgtttctccaggagat 608
Query: 124 gtaccaggtaagagaagtggccccacactggtggagtttttctttctggaacatgtgttt 183
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gtaccaggtaagagaagtggctccacactggtggagtttttctttctggaacatgtgttt 548
Query: 184 gcttttcacctgaggcttttcagaaccagtcagatgtttcgctctgtggcctcctgacat 243
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 547 gcttttcacctgaggtttttcagaaccagtcagatgtttcgttctgtggcctcctgacat 488
Query: 244 atctgatgcattttgctttgatgccagctgtgttgtggtgtgctaacaggatggcgcaag 303
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 487 atctgatgcattttgctttgatgccagctgtgatgtggtgtgctaacaggatggcgcaag 428
Query: 304 agagcacatcccctagggattatgtgtaactgctggccttcacatggccaaggaggctac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agagcacatcccctagggattatgtgtaactgctggccttcacatggccaaggaggctac 368
Query: 364 ccacacatgagcaagaacagctaattggctaaagctaccttatcatattaacagtgtttc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ccacacatgagcaagaacagctaattggctaaagctaccttatcatattaacagtgtttc 308
Query: 424 gaagggccacgctttaatatgattccacgtgaggctacacacctctttcatggttgccat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaagggccacgctttaatatgattccacgtgaggctacacacctctttcatggttgccat 248
Query: 484 tcaccagctgactaaatggtctttgctgctaaaattccctgctg 527
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tcaccagctgactaaatggtctttgctgctaaaattccctgctg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 926
Length adjustment: 10
Effective length of query: 517
Effective length of database: 916
Effective search space: 473572
Effective search space used: 473572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_f12.g1 MSMg01no336_f12.g1 CHROMAT_FILE:
MSMg01no336_f12.g1 PHD_FILE: MSMg01no336_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:23 2005
(487 letters)
>mm_chr3_53913635_53914521
Length = 887
Score = 872 bits (451), Expect = 0.0
Identities = 478/487 (98%)
Strand = Plus / Plus
Query: 1 aacatttactacagttgaaagactcatttcaaaattgagtggccaagcaaatgctcagac 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatttactacagtcgaaagactcatttcaaaattgagtggccaagcaaatgctcagac 260
Query: 61 tgcccagaaggctttgttgcttggctgattttccttcccagccaatgtggcaaatctagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcccagaaggctttgttgcttggctgattttccttcccagccaatgtggcaaatctagg 320
Query: 121 acaaggatgaaagtcttcagtgtctggggctggcttcctccaacctagccttccgttccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 321 acaaggatgaaagtcttcagtgtctggggctggcttcctccaacctagccttctgtttcc 380
Query: 181 tattagaaatgatagaattgcaaggtttcaggccttgcaatccacatgtgggctgtgtgg 240
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tattcgaaatgatagaattgcaaggtttcagtccttgcaatccacatgtgggctgtgtgg 440
Query: 241 ggataatgttctagacatgttgactctgtatttctcaaaaggcagattagtacaggctca 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagaatgttctagacatgttgactctgtatttctcaaaaggcagattagtacaggctca 500
Query: 301 gaagaaaagaggtgaatgttctgaggggccagagagccctttcccacccccgcagctcag 360
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 gaagaaaagaggcgaatgttctgaggggccagagagccctttcccacctccgcagctcag 560
Query: 361 ttccctctgagccttctgtctgctccagtgtcttctcagctgcatggaaggtgcctgagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttccctctgagccttctgtctgctccagtgtcttctcagctgcatggaaggtgcctgagc 620
Query: 421 tgccctcctgtctacctccttctccttcttcttcagcctgggccctcaaaccacagaggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgccctcctgtctacctccttctccttcttcttcagcctgggccctcaaaccacagaggg 680
Query: 481 gtaaacc 487
| |||||
Sbjct: 681 gcaaacc 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
