Query= MSMg01no336_g22.b1 MSMg01no336_g22.b1 CHROMAT_FILE:
MSMg01no336_g22.b1 PHD_FILE: MSMg01no336_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:29 2005
(462 letters)
>mm_chr3_17158728_17159586
Length = 859
Score = 845 bits (437), Expect = 0.0
Identities = 448/453 (98%), Gaps = 3/453 (0%)
Strand = Plus / Minus
Query: 5 gaattcatcagtttctttaaattcaccagccaatttaatctagcacctgctttggctact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gaattcatcagtttctttaaattcaccagccaatttaatctagcacctgctttggctact 595
Query: 65 tttttcaactctcaaatttgaatgtgagcatccaagtatagttcctaatgttatgcagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tttttcaactctcaaatttgaatgtgagcatccaagtatagttcctaatgttatgcagaa 535
Query: 125 agggctgaagcttgttcagcctctttctacacagtctgtttctctttctcctttgcaccc 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agggctgaagcttgttcagcctctttctacacagtctgtttctctttctcctttgca--- 478
Query: 185 ccccccagttgactcagttaagttagcttctttgcaaatacatgaactccatgctattaa 244
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 477 ctccccagttgactcagttaagttagcttctttgcaaatacgtgaactccatgctattaa 418
Query: 245 ggcagcatagacgccttgagagtaatgaaatatttacacaattgtgttcaaattgtaact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggcagcatagacgccttgagagtaatgaaatatttacacaattgtgttcaaattgtaact 358
Query: 305 gttccaccttgtcaaagcctaaggacagtaacagtgcattatggattttaatggccagca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gttccaccttgtcaaagcctaaggacagtaacagtgcattatggattttaatggccagca 298
Query: 365 tcaagaaagcactttcctagggaggctctcactggaatctaacttttgctatgtgtttgc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tcaagaaagcactttcctagggaggctctcactggaatctaacttttgctatgtgtttgc 238
Query: 425 atcatcacataccttatgaagttttatcatatc 457
|||||||||||||||||||||||||||||||||
Sbjct: 237 atcatcacataccttatgaagttttatcatatc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 859
Length adjustment: 10
Effective length of query: 452
Effective length of database: 849
Effective search space: 383748
Effective search space used: 383748
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_g22.g1 MSMg01no336_g22.g1 CHROMAT_FILE:
MSMg01no336_g22.g1 PHD_FILE: MSMg01no336_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:29 2005
(482 letters)
>mm_chr3_17071722_17072605
Length = 884
Score = 878 bits (454), Expect = 0.0
Identities = 476/484 (98%), Gaps = 2/484 (0%)
Strand = Plus / Plus
Query: 1 ccaagtttttgctattccccaaagtaccataaatatacaaacatgaaatataataaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaagtttttgctattccccaaagtaccataaatatacaaacatgaaatataataaaaca 260
Query: 61 ctatctcaattatcacattagtaattaatgtgaggttcttaaatctttgtttagttataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatctcaattatcacattagtaattaatgtgaggttcttaaatctttgtttagttataa 320
Query: 121 tttactgctaatcacataaaaatagtgtttggtatgaaacctctcaccactaaacatata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttactgctaatcacataaaaatagtgtttggtatgaaacctctcaccactaaacatata 380
Query: 181 tcttcaacaattactatattcatagataatgaatttaaaattataattagaaaagaatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttcaacaattactatattcatagataatgaatttaaaattataattagaaaagaatta 440
Query: 241 gttgcaaaaataaattatactatactactgagataaaaaatagaggacaaacttttaaag 300
|||||||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||
Sbjct: 441 gttgcaaaaataaattttactatagtactgagatgaaaaatagaggacaaaattttaaag 500
Query: 301 attaataaaatgaaggaaattagtattttttagctagtaacccacctacatcttagcttt 360
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 attagtaaaatgaaggaaattaatattttttagctagtaacccacctacatcttagcttt 560
Query: 361 ctcattcagttttcttataatttatacacaggttcttgatatttatcattataaaacatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcattcagttttcttataatttatacacaggttcttgatatttatcattataaaacatt 620
Query: 421 tcattcttaattttgaaaataacaaatcaacaatca--aataatttaataacctatttct 478
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 tcattcttaattttgaaaataacaaatcaacaatcacaaataatttaataacctatttct 680
Query: 479 ttac 482
||||
Sbjct: 681 ttac 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 884
Length adjustment: 10
Effective length of query: 472
Effective length of database: 874
Effective search space: 412528
Effective search space used: 412528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
