BAC Information

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BAC

Clone NameMSMg01-336J19
Chromosome3 (Build37)
Map Location 64,109,033 - 64,109,417
singlet/doubletsinglet
Overlap gene4930518C23Rik
Upstream geneMme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739, EG637004
Downstream geneEG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336J19.T7 (MSMg01no336_j19.b1)MSMg01-336J19.TJ (MSMg01no336_j19.g1)
ACCAG451588AG451589
length657731
length of high quality
(start - end)		389 (63 - 451)486 (71 - 556)
definitionCHROMAT_FILE: MSMg01no336_j19.b1 PHD_FILE: MSMg01no336_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:43 2005CHROMAT_FILE: MSMg01no336_j19.g1 PHD_FILE: MSMg01no336_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCTATAATATTCCTCAGGCAATGTAGACAC
CAGAAAATGGAGAACATTCTTAGATAATATTACAAGATCCTATGACCTTG
AGTGTAGAAAGGACAAGTACAATGTAAGAGGAGGGTAGCTGGCTAGTGTT
ATATTGGTGTCAAATTATACTAAAAAAATATGAAAAGTATAATATTTCAT
GACTGAGTCCTATTTAATTATAGTCAAGTTGGTTTAACATTTAATATGAG
AAAATATCATGTTCACAGTTATAGAAAACTTTTTGCTAATGTATACAGGC
ATACATGCTAAAAACTGTTATTTTTAAAGAGATTAGATATTTCCTGGTTG
TTGATAATATCTCAAAAATCATGAAGTANATGTCTTTCTATGTGACTTGT
GGGAAGATTTTCTTTTGAGACTANGAACAAGAAATGATTCTCTTTTCAGT
GGTGCATTTTCATGAGTCTTTTTCAATAAAATGTTTATTACTTTTAAATG
GAGAAACCAAATTACTCTGGGNACTCTTGGCAAACCTTCCTGAAATTAAG
ACCCTAACCGATTTAATTTTGGTTTGAAATCCTATTCCCGGGGAAAAACC
TTATCCA

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTAATCCACTTAGATTTGACCTCAGTACA
AGGAGATAGGAATAGATCAAATTGCATTCTTTTACATGATAACGGACAGT
TGTGCCAGCACCATTTGTTGAAAATGCTGGCTTTTTTCCACTGGATGGTT
TTAGCTCCCTTGTCAAAGATTAAGTGACCATAGGTGTGTGGGTTCATCTC
TGGGTCTTCAATTCTTTTTCATTGGTCAACTTGTCTGTCGCTATACCAGT
ACCATGCAGTTTTTATCACAATTGCTTTGTAGTACAGCTTTAGGTCAGGC
ATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTACTCT
CCTAGGTTTTTTGTTATTCCAGATGAATTTGCCAATTGCCCTTTCTAAAT
CGTTGAAGAATTGAGTTGGAATTTTGATGGCGATTGCATTGAATCTGTAG
ATTGCTTTTGGGAAGATAGACATTTTTACTATTTTTACTACAACGACAGA
CAGGTAGATCAATAGAATAGAATTGAAGACCCCGAAATGAACCCCCACCC
CTATGGTCACTTGAATTTTGACAAAGGGTTAAAACCACCCGGGGGAAAGA
AGACAGATCTTTCACAACCCGTGCTGGGCCCCCTGGAAGTTTTCTTTTTA
TACAATGGTAATTGTTCCCCCCCCCTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_j19.b1 MSMg01no336_j19.b1 CHROMAT_FILE:
MSMg01no336_j19.b1 PHD_FILE: MSMg01no336_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:43 2005
         (389 letters)



>mm_chr3_64108829_64109617
          Length = 789

 Score =  731 bits (378), Expect = 0.0
 Identities = 383/385 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctataatattcctcaggcaatgtagacaccagaaaatggagaacattcttagata 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctataaaattcctcaggcaatgtagacaccagaaaatggagaacattcttagata 264

                                                                       
Query: 65  atattacaagatcctatgaccttgagtgtagaaaggacaagtacaatgtaagaggagggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atattacaagatcctatgaccttgagtgtagaaaggacaagtacaatgtaagaggagggt 324

                                                                       
Query: 125 agctggctagtgttatattggtgtcaaattatactaaaaaaatatgaaaagtataatatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agctggctagtgttatattggtgtcaaattatactaaaaaaatatgaaaagtataatatt 384

                                                                       
Query: 185 tcatgactgagtcctatttaattatagtcaagttggtttaacatttaatatgagaaaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcatgactgagtcctatttaattatagtcaagttggtttaacatttaatatgagaaaata 444

                                                                       
Query: 245 tcatgttcacagttatagaaaactttttgctaatgtatacaggcatacatgctaaaaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcatgttcacagttatagaaaactttttgctaatgtatacaggcatacatgctaaaaact 504

                                                                       
Query: 305 gttatttttaaagagattagatatttcctggttgttgataatatctcaaaaatcatgaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttatttttaaagagattagatatttcctggttgttgataatatctcaaaaatcatgaag 564

                                    
Query: 365 tanatgtctttctatgtgacttgtg 389
           || ||||||||||||||||||||||
Sbjct: 565 taaatgtctttctatgtgacttgtg 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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