BAC Information

Click to search

BAC

Clone NameMSMg01-336K05
Chromosome3 (Build37)
Map Location 48,978,293 - 48,978,625
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666208, 1700018B24Rik, LOC100039404, EG666230
Downstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336K05.T7 (MSMg01no336_k05.b1)MSMg01-336K05.TJ (MSMg01no336_k05.g1)
ACCAG451608AG451609
length738636
length of high quality
(start - end)		572 (63 - 634)---
definitionCHROMAT_FILE: MSMg01no336_k05.b1 PHD_FILE: MSMg01no336_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:45 2005CHROMAT_FILE: MSMg01no336_k05.g1 PHD_FILE: MSMg01no336_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GAATTATAGCGGACAGAAAGCATGAAGGAGCAAGAGGGGCTAGAGATCAA
CATGAAAACAAGGACACCGAATAAATGTGATCAATGTTCTTATAAAGTCA
CAGAGACTGAGACAGCATGCACAGGCCATGCACAGTCTGCATCAGGTTCT
TTGAGTATACATCATGGTTTCTAGTTTAGCATTTTTATGGAATTCTCCAG
TGAGCAAACGAGTGAGTCTCTATTTCTTGTGATTTCTTTTGGCTTCTTTC
CTTCTGTTTGTTTCTTTTGTCCAATTCCAATGGGTTAGTTTTTATTTTAT
CAACCTATATTCTACTTAATTTATTATTATCTTTAGGATCCTGCTTGTTC
TCTAATGAGAGAATGGGGATGCAAAGAGAAAGCAGGAGGAGTAGAGAAGG
GAGGCCATAAGCAGAATATATTATATGAGAAAATAGTTATTTTTAATAAA
ATGAAAATAAAATAAGAAGAAAACAGAATTCAAGAAATTTATCTGAAACC
AGTTAAATAGTGAAATTACCATTGGAGTACAGCAAATACTTTGAAAAAAA
ATTACTGTCAAGTTGAGAAGTGTATTTTGGAACTCTTAAGTTTATGTATG
TATTCACAGGTACATAGGTATACATAAGTGTATAAACACATACCGGCNCA
TTACTAGAGAAAGAGAGAGACAGGTAGATTAAATTATC

AATAATCTCCCCCTCCCTTTTACACCAAACCAAAACAAATCACCTCTCTC
CCCTTCCCCCTTTTCCCTAAACCACTATCATCATATCCNTCCNCACTACC
CATACCCTATCATTATTTTCCCCTCATTCTTTTCTCCCCATCCACTCTCC
ATTATCCTCACCTTTCTNTCACCACACAAATACAAAAAAAAATACTTAAT
AAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAATCAATAAAACANGN
TTTCTAAAAAAATAAAAAAATTNNTNGCCCCAAAAAAAAAATAAATTNGG
NTTAAGNCCCTGGGNCCAACCGNCCCTTGTTTTTCCCAACCAAAAAATTT
TTAAGGGTTGAACACTATAGAATTTACCGNCCNAATTCAAGAACATGAAT
AAAAGCCCTAACCATTAAAATAATGGTGAAAAATAGAAATTCCCATTCCC
CAAAAATTTTAAAAATTTTCCTTTCCCAGGCCAAAAACTTCCAAAAAAAC
TTTCAAAAAAAAACCCCTAAACCCCAACCTAAAAGTAAAAACCCCCACCC
CTTAAAAAAAAAAGGCTCTAAAGCCCCCCCCTTCTCCCCAAAAAAAAAAA
AAAATGCCCCCTCAATAAATAAAACCCCCTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_k05.b1 MSMg01no336_k05.b1 CHROMAT_FILE:
MSMg01no336_k05.b1 PHD_FILE: MSMg01no336_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:45 2005
         (572 letters)



>mm_chr3_48977654_48978625
          Length = 972

 Score =  644 bits (333), Expect = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Minus

                                                                       
Query: 240 ttctgtttgtttcttttgtccaattccaatgggttagtttttattttatcaacctatatt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 ttctgtttgtttcttttgtccaattccaatgggttagtttttattttatcaacctatatt 913

                                                                       
Query: 300 ctacttaatttattattatctttaggatcctgcttgttctctaatgagagaatggggatg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 ctacttaatttattattatctttaggatcctgcttgttctctaatgagagaatggggatg 853

                                                                       
Query: 360 caaagagaaagcaggaggagtagagaagggaggccataagcagaatatattatatgagaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 caaagagaaagcaggaggagtagagaagggaggccataagcagaatatattatatgagaa 793

                                                                       
Query: 420 aatagttatttttaataaaatgaaaataaaataagaagaaaacagaattcaagaaattta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aatagttatttttaataaaatgaaaataaaataagaagaaaacagaattcaagaaattta 733

                                                                       
Query: 480 tctgaaaccagttaaatagtgaaattaccattggagtacagcaaatactttgaaaaaaaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tctgaaaccagttaaatagtgaaattaccattggagtacagcaaatactttgaaaaaaaa 673

                                            
Query: 540 ttactgtcaagttgagaagtgtattttggaact 572
           |||||||||||||||||||||||||||||||||
Sbjct: 672 ttactgtcaagttgagaagtgtattttggaact 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |