Query= MSMg01no336_k08.b1 MSMg01no336_k08.b1 CHROMAT_FILE:
MSMg01no336_k08.b1 PHD_FILE: MSMg01no336_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:45 2005
(526 letters)
>mm_chr3_146811244_146812167
Length = 924
Score = 930 bits (481), Expect = 0.0
Identities = 509/519 (98%), Gaps = 2/519 (0%)
Strand = Plus / Plus
Query: 8 gaattcctttgatatctgctctgcgctggactgtgcagacatgtccatggaaactgtttc 67
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcctttgatatctgctctgtgctggactgtgcagacatgtccatggaaactgtttc 267
Query: 68 aggggaaaactgacacacacacatacatgttgatcagactggataacccttgctttgtgc 127
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 268 aggggaaaactgacacacaca--tacatgttgatcagactggataactcttgctttgtgc 325
Query: 128 atttgctaatttatacatatgcagaaatatgaagaaagcaaagctaggaagaaacacttc 187
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 326 atttgctaatttatacatatgcagaaatatgaagaaagcaaagctaggaagagacacttc 385
Query: 188 tttccataaaatttattatacacaaatattgtatcaaaggcgagtttaagaggacatcaa 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttccataaaatttattatacacaaatattgtatcaaaggcgagtttaagaggacatcaa 445
Query: 248 tatgctctgttgacatttcatcactgcagcaggttttgtgttagcaccgtgagtatccca 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tatgctctgttgacatttcatcactgcagcaggttttgtgttagcaccgtgagtatccca 505
Query: 308 tgaatgtcagtggtagttttggggggtctgggaactaaactcgggacgttctgaatacta 367
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 506 tgaatgtcagtggtagttttgaggggtctgggaactaaactctggacgttctgaatacta 565
Query: 368 ggtatcccagcccccactcgttgtttgctaaagctttactacagagcaattgtgataaaa 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggtatcccagcccccactcgttgtttgctaaagctttactacagagcaattgtgataaaa 625
Query: 428 actgcatggtactggtatagcgacaggcaagtataccaatggaatagaattgaagaccca 487
|||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct: 626 actgcatggtactggtatagtgacagacaagtagaccaatggaatagaattgaagaccca 685
Query: 488 gagatgaacccacacacctatggtcacttgatctttgac 526
|||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gagatgaacccacacacctatggtcacttgatctttgac 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 924
Length adjustment: 10
Effective length of query: 516
Effective length of database: 914
Effective search space: 471624
Effective search space used: 471624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_k08.g1 MSMg01no336_k08.g1 CHROMAT_FILE:
MSMg01no336_k08.g1 PHD_FILE: MSMg01no336_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:46 2005
(440 letters)
>mm_chr3_146961736_146962574
Length = 839
Score = 743 bits (384), Expect = 0.0
Identities = 430/460 (93%), Gaps = 26/460 (5%)
Strand = Plus / Minus
Query: 1 caaagaaatgtggtggggagagagagagagaaagaaagagacagaaagacagacagacag 60
||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 786 caaagaaatgt-gtggggagagagggagagaaagaaagagacagaa----agacagacag 732
Query: 61 acagacagacagacagacagacaacagacagagatggagatagag--------------- 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 acagacagacagacagacagacaacagacagagatggagatagagacagtgacagataga 672
Query: 106 -----acagagatagagagacagacagacagaatgcctgcctgcctttactactgctgct 160
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gacaaacagagatagagagacagacagacagaatgcctgcctgcctttactactgctgct 612
Query: 161 tgtagtactactacaaccttgattgacatcagacactaacttcatgatcttcccacgtgg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgtagtactactacaaccttgattgacatcagacactaacttcatgatcttcccacgtgg 552
Query: 221 cctcactatggaactcactcatggaatttttactcccagatcttgtcttgctgaagcatc 280
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 551 cctcactatggaactcactcatggaacttttactcccagatcttgtcttgctgaagcatc 492
Query: 281 ccaatgcttggccctgagcatcaactgagttccttaaatctgcaacttggaaatgtctac 340
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 491 ccaatgcttgg-cctgagcatcaactgagtcccttaaatctgcaacttggaaatgtctac 433
Query: 341 tgttgggctactccagcaccatcttataagccagtcttataattcaccatttgttgttta 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgttgggctactccagcaccatcttataagccagtcttataattcaccatttgttgttta 373
Query: 401 tgaatatacatatatgtatatacacattcatatatctaca 440
||||||||||||||||||||| ||||||||||||||||||
Sbjct: 372 tgaatatacatatatgtatatgcacattcatatatctaca 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 839
Length adjustment: 9
Effective length of query: 431
Effective length of database: 830
Effective search space: 357730
Effective search space used: 357730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
