BAC Information

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BAC

Clone NameMSMg01-336L10
Chromosome3 (Build37)
Map Location 29,803,398 - 30,020,002
singlet/doubletdoublet
Overlap geneEvi1
Upstream geneGm1527, 6130401L20Rik, LOC100040676
Downstream geneMds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1, Gpr160, Phc3, LOC100040809, Prkci, Skil
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336L10.T7 (MSMg01no336_l10.b1)MSMg01-336L10.TJ (MSMg01no336_l10.g1)
ACCAG451665AG451666
length753757
length of high quality
(start - end)		523 (42 - 564)397 (71 - 467)
definitionCHROMAT_FILE: MSMg01no336_l10.b1 PHD_FILE: MSMg01no336_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:51 2005CHROMAT_FILE: MSMg01no336_l10.g1 PHD_FILE: MSMg01no336_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,803,398 - 29,803,916)(30,019,607 - 30,020,002)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACATTTCTTTCTGATTTGGGTCTAATACCTTCTAGCTAACCTATTGCAC
ATGCATAAACCTAAGCTATAAGTAGATGGAGGTAATTTAGTATTATCACT
AATATTTCTGTGTATTTTCACTTCATGACAGTGTTTTCTCTCAAAGAAAA
GTTTGCATGTTATTTTTTTCTAAGAAACAGTTAATTTCAGAATATAAAAA
ATATACTTTCAGGAATTTCTAGAAAGAGCTTTAGCTACTACAAAGTTACC
ATGTATAGCAGGCAGTCTTATGGAGCTTAGAGCTTCTCAAATCATACTTG
AACTGTGGCATTTGATGCACAGATATAAGAGGACAACTAACTCTTAAAAT
ATTCAAATGAGGGTGACAGAATTTATGAGTTGTGTGAAATGCAAATAATG
CTAATAATGTTTTAAAATGCCCGACACTATTACTGAGGTTATAGAGTGCT
CACAAAAAGGGATCTATCATATCTGCCCTCCAAAAGACCCAACAAGCAGC
TGAAACAATGAGATGCAGATATTTACACCCAACCAATGGACAGAAGCTGC
TGACCACTGTGGTTGAATTAGGAAAAAACTAGGAGAAGCTGAAGAGGGAA
GTGACCTGTATGAGGACAACAGTCTCAATTAACCAATGCCCCCCCCCCCG
AGGATCCCTCGAAAATGTATTCCCATACCGGACCCCAGTTGAAATGAATC
CCC

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCATTTACGGGCCCCTTATGAGTCAGTTTC
TCTGGTGCATGATCTTCGTGCTGGCTGTCTCTCTGGAAGTGTGTCATCAC
GTTCTTCGTGTTTGCTCAGCTCCAGCTTTGCTGCACAAGGACTTTCTTTT
CCAGAGAATCAGTATCCCTGCCTCGTGAAAATCCGGAAATGGCTCTAGGC
CTGCTCTGCAAGTACTAGGATGCTGGGAAGTCACAGATCCTGGCCTCAAT
CTCTACATCAGCAAAATCATGACAAGTGGGTACCAGAAAGTGGGAGCACG
AAATCTAGATACACTCTCCCATCTTTCCTGCCTGTTCATCATTTCTCATT
ACTGAATTACTGCCACATAGACCCCCTTGCTCTACTGTGTATGATGGGGG
GAGAGAGGGAGGGAGGNAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_l10.b1 MSMg01no336_l10.b1 CHROMAT_FILE:
MSMg01no336_l10.b1 PHD_FILE: MSMg01no336_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:51 2005
         (523 letters)



>mm_chr3_29803194_29804116
          Length = 923

 Score =  942 bits (487), Expect = 0.0
 Identities = 511/519 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatttctttctgatttgggtctaataccttctagctaacctattgcacatgca 64
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatttcattctgatttgggcctaataccttctagctaacctattgcacatgca 264

                                                                       
Query: 65  taaacctaagctataagtagatggaggtaatttagtattatcactaatatttctgtgtat 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaactaagctataagtagatggaggtaatttagtattatcactaatatttctgtgtat 324

                                                                       
Query: 125 tttcacttcatgacagtgttttctctcaaagaaaagtttgcatgttatttttttctaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttcacttcatgacagtgttttctctcaaagaaaagtttgcatgttatttttttctaaga 384

                                                                       
Query: 185 aacagttaatttcagaatataaaaaatatactttcaggaatttctagaaagagctttagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacagttaatttcagaatataaaaaatatactttcaggaatttctagaaagagctttagc 444

                                                                       
Query: 245 tactacaaagttaccatgtatagcaggcagtcttatggagcttagagcttctcaaatcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tactacaaagttaccatgtatagcaggcagtcttatggagcttagagcttctcaaatcat 504

                                                                       
Query: 305 acttgaactgtggcatttgatgcacagatataagaggacaactaactcttaaaatattca 364
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acttgaactgtggcatttaatgcacagatataagaggacaactaactcttaaaatattca 564

                                                                       
Query: 365 aatgagggtgacagaatttatgagttgtgtgaaatgcaaataatgctaataatgttttaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgagggtgacagaatttatgagttgtgtgaaatgcaaataatgctaataatgttttaa 624

                                                                       
Query: 425 aatgcccgacactattactgaggttatagagtgctcacaaaaagggatctatcatatctg 484
           ||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatactcgacactattactgaggctatagagtgctcacaaaaagggatctatcatatctg 684

                                                  
Query: 485 ccctccaaaagacccaacaagcagctgaaacaatgagat 523
           |||||||||||||||||||||||||||||| ||||||||
Sbjct: 685 ccctccaaaagacccaacaagcagctgaaagaatgagat 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no336_l10.g1 MSMg01no336_l10.g1 CHROMAT_FILE:
MSMg01no336_l10.g1 PHD_FILE: MSMg01no336_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:51 2005
         (397 letters)



>mm_chr3_30019407_30020203
          Length = 797

 Score =  758 bits (392), Expect = 0.0
 Identities = 395/396 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatttacgggccccttatgagtcagtttctctggtgcatgatcttcgtgctggctgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ccatttacgggccccttatgagtcagtttctctggtgcatgatcttcgtgctggctgtct 537

                                                                       
Query: 61  ctctggaagtgtgtcatcacgttcttcgtgtttgctcagctccagctttgctgcacaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctctggaagtgtgtcatcacgttcttcgtgtttgctcagctccagctttgctgcacaagg 477

                                                                       
Query: 121 actttcttttccagagaatcagtatccctgcctcgtgaaaatccggaaatggctctaggc 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 476 actttcttttccagagaatcagtatccctgcctcgtgaaaatctggaaatggctctaggc 417

                                                                       
Query: 181 ctgctctgcaagtactaggatgctgggaagtcacagatcctggcctcaatctctacatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctgctctgcaagtactaggatgctgggaagtcacagatcctggcctcaatctctacatca 357

                                                                       
Query: 241 gcaaaatcatgacaagtgggtaccagaaagtgggagcacgaaatctagatacactctccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gcaaaatcatgacaagtgggtaccagaaagtgggagcacgaaatctagatacactctccc 297

                                                                       
Query: 301 atctttcctgcctgttcatcatttctcattactgaattactgccacatagacccccttgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atctttcctgcctgttcatcatttctcattactgaattactgccacatagacccccttgc 237

                                               
Query: 361 tctactgtgtatgatggggggagagagggagggagg 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 tctactgtgtatgatggggggagagagggagggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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