BAC Information

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BAC

Clone NameMSMg01-336P10
Chromosome3 (Build37)
Map Location 156,366,760 - 156,367,007
singlet/doubletsinglet
Overlap geneNegr1
Upstream geneEG668902, LOC624519, LOC100040901, 4930570G19Rik
Downstream geneLOC100041152, LOC668853, LOC546818, Zranb2, Ptger3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336P10.T7 (MSMg01no336_p10.b1)MSMg01-336P10.TJ (MSMg01no336_p10.g1)
ACCAG451856AG451857
length740746
length of high quality
(start - end)		535 (64 - 598)240 (71 - 310)
definitionCHROMAT_FILE: MSMg01no336_p10.b1 PHD_FILE: MSMg01no336_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:11 2005CHROMAT_FILE: MSMg01no336_p10.g1 PHD_FILE: MSMg01no336_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCAATTTACCGATATCGAATGGCTGAGATGCACCTGAAAAAATGTTCAAC
ATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCTACC
TCATACCAGTCAGAATGGCTAAGATTGAAAATTCAGGTGACAGCAGATGC
TGACGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTG
CAAGCTTGTAAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATT
GGACATAATAATACCGAAAGATCCAGGAATACCTCTTCTGGGCATATACC
CAGAAGAAGTTCCAACTGGTAATAAGAACACATGCTCCACTATGTTCATA
GCAGTCTTATTTATAATAGCCAGAAGCTGGGAAAAAAATAAACCCAGATG
TCCCTTAACAGAAGAATGGATACAGAAAATGAGGTACATTTACACAATGG
AGTACTACTCAGCTATTAAAAACAGTGGCATGATCTTGAAGCATTCAGTC
ACAGTCAAGAGCAGAGAGAAATGAAAGAACAAAGGGCTAGTACTTTGATG
GTTGTCTACTCTTGTAGATTTCAGGGNATGCTGCTCCTACTTTACTTCAG
TCTGGGTCTTCTCCACATGCCAAGGGAGTCGAAACCCAAGGGAGGTGTAT
GGGCCTGCTATAAGAATCCACCTCCCTCTTTGAAATCTCT

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATAGAAAACTAGGACTGAAGAATTTTTAGC
TTCACTTAACTCCTTTTTTCTCCCCCCTCTGTTTTTACCCCCTTCCTCCC
ATTCTTCCTTTTTTTTTTTTTTCGTCTTTTTTCATTTAGACAAGGTCTCA
GGCTAGCTTTCAAGTCCCATCACTGCAGGGGAAAAAAACCCTTCATAAAT
TGTGCTTAAGGACCACTGTAGACTGAATTGTGTGCTTAAAAGTCCACAGG
CTAAATTCCTGTTTTTAAACTGATGCTTTTTATAGAAAACTGCCCTTGGG
AAGTAACTGAAATTAGGTGGCCACGGTGGGATTGGTAGAAAAGCAGTAGA
CCTCTTTCTGTTGCTTCATAGTGACAAGACCAAGGACAGAAGAATGGTCT
CTGTGAGCCCAGAAGAGCATCATGACCTTGGGCATACAATCTCCAACTGA
GAAAAGATTATTTATTTTTATGATCTCCGCTGTTTTGTTATGACAGTGAT
AGTCAAGTGTAAATCTGCAGTGCGAACACAGACGTGGACCTTCCTTCCCT
CCTTGGTCCCTTTGGGTCTCATAGGAGGATGATCATAGCAATGAAATACC
ATTAATGGGGAAGTTTACAAATAGCTTTATTTGTGTTTCTGATGGAGACC
ATACAGACTGAATGCTTCCGCAAGGGGAAAAACTCCATGGAGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_p10.g1 MSMg01no336_p10.g1 CHROMAT_FILE:
MSMg01no336_p10.g1 PHD_FILE: MSMg01no336_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:11 2005
         (240 letters)



>mm_chr3_156366568_156367207
          Length = 640

 Score =  437 bits (226), Expect = e-127
 Identities = 239/248 (96%), Gaps = 8/248 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagaaaactaggactgaagaatttttagcttcacttaactccttttttctcccccctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atagaaaactaggactgaagaatttttagcttcacttaactccttttttctcccccctct 252

                                                                       
Query: 61  gtttttacccccttcctcccattcttcctttttttttttttt--------cgtctttttt 112
           ||||||||||||||||||||||||||||||||||||||||||        ||||||||||
Sbjct: 253 gtttttacccccttcctcccattcttccttttttttttttttttttttttcgtctttttt 312

                                                                       
Query: 113 catttagacaaggtctcaggctagctttcaagtcccatcactgcaggggaaaaaaaccct 172
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 313 catttagacaaggtctcaggctagctttcaagtcccatcactgcaggggaaaaaaaacct 372

                                                                       
Query: 173 tcataaattgtgcttaaggaccactgtagactgaattgtgtgcttaaaagtccacaggct 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tcataaattgtgcttaaggaccactgtagactgaattgtgtgcttaaaagtccacaggct 432

                   
Query: 233 aaattcct 240
           ||||||||
Sbjct: 433 aaattcct 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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