Query= MSMg01no337_e20.b1 MSMg01no337_e20.b1 CHROMAT_FILE:
MSMg01no337_e20.b1 PHD_FILE: MSMg01no337_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:38 2005
(632 letters)
>mm_chr3_144989325_144990354
Length = 1030
Score = 1075 bits (556), Expect = 0.0
Identities = 608/626 (97%), Gaps = 2/626 (0%)
Strand = Plus / Plus
Query: 5 gaattcagagttagttaaacacagaaaacgaatggaagtctatttccagaaagacaatat 64
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 205 gaattcagagttagaaaaacacagaaaatgaatgaaagtctatttccagaaagacaatat 264
Query: 65 cttcattggcctggtcatcgctaggagaaaaaaaaaatactaggaaatctgagaaatagt 124
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 cttcattggcctggtcattgctaggagaaaaaaaaaattctaggaaatctgagaaatagt 324
Query: 125 atcctatcttttaaaatacctaaatacatcaagcttactctattattaaatgttgaaatt 184
|| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 325 atgctatcttttaaaatacctaaatacagcaagtttactctattattaaatgttgaaatt 384
Query: 185 agaggtcaactctgttctggtgagttcaaaatagagactccagattaagcctaagcattc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaggtcaactctgttctggtgagttcaaaatagagactccagattaagcctaagcattc 444
Query: 245 atatcaaatatggttttatctttctctgtgatttgtcttttgtacaaaatatagggtgtc 304
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 atatcaaatatggttttatctttctctgtgatttgtctgttgtacaaaatatagggtgtt 504
Query: 305 tcagtatgggagtggaaacttgagtgatgtctccatttgaagtgttttgacttattcatg 364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcagtatgggagtggaaacttgaatgatgtctccatttgaagtgttttgacttattcatg 564
Query: 365 cactaactgtgcttagtagtgtatataaaaaaaatgcacttagatgtaaaaatttaatac 424
||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct: 565 cactaactgtgcttagtagtgtatatacaaaa--tgctcttagatgtaaaaatttaatac 622
Query: 425 cacacgtccattgagctttaagcgaaaccaaagttttgaatagatgcattccgctttctt 484
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 623 cacacgtccattgagctttaagcaaaaccaaagttttgaatagatgcattccgctttctt 682
Query: 485 ttgtctttttccatgtaaagactaccaggatttaggcaggacagacaggggctgtgctac 544
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 683 ttgtctttttccatgtaaagactaccaggatttaggcaggacatacaggggctgtgctac 742
Query: 545 tgaactatatgtgtagcacttctctatcagtttatatgtgtgtatgtataccgtgtgtgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgaactatatgtgtagcacttctctatcagtttatatgtgtgtatgtataccgtgtgtgt 802
Query: 605 gtgtgtgtgtgtgtgtgtgtgtgtgt 630
||||||||||||||||||||||||||
Sbjct: 803 gtgtgtgtgtgtgtgtgtgtgtgtgt 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1030
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1020
Effective search space: 634440
Effective search space used: 634440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_e20.g1 MSMg01no337_e20.g1 CHROMAT_FILE:
MSMg01no337_e20.g1 PHD_FILE: MSMg01no337_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:38 2005
(491 letters)
>mm_chr3_145190326_145191216
Length = 891
Score = 810 bits (419), Expect = 0.0
Identities = 441/457 (96%), Gaps = 15/457 (3%)
Strand = Plus / Minus
Query: 41 ccagattgagttaagagttttgtggacagtcattcagtaacagcttggggtgtcctcatc 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 ccagattgagttaagagttttgtggacagtcattcagtaacagcttggggtgtcctcatc 832
Query: 101 tgagcacagagcttttatgtggagctgggtgtggtggcaacactgtaatcccagcatttg 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tgagcacagagcttttatgtggagctgggtgtggtggcaacactgtaatcccagcatttg 772
Query: 161 aaattgagcacaaggtgagcctgggacactgtttcaaaacaaagtgccagaaaaagctct 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 aaattgagcacaaggtgagcctgggacactgtttcaaaacaaagtgccagaaaaagctct 712
Query: 221 aagttcagtgaagggatgaaaagaaaaaaaaaaagaaaaaagaaaagaaaaaagaagaga 280
|||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 711 aagttcagtgaagggatgaaaagaaaaaaaaaaa--------aaaagaaaaaagaagaga 660
Query: 281 aaaaagctttatgcactatagtttaagagaacatattataacatgaaaatcacttaatgt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aaaaagctttatgcactatagtttaagagaacatattataacatgaaaatcacttaatgt 600
Query: 341 tttaaacatgggcataaaactgcccacatctgagtataaagctgtcagtaagtacagagt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tttaaacatgggcataaaactgcccacatctgagtataaagctgtcagtaagtacagagt 540
Query: 401 aagggttcagaatgaaataaaacaaaacagcttcctcatgtagtctagtaagggg----- 455
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aagggttcagaacgaaataaaacaaaacagcttcctcatgtagtctagtaaggggggggg 480
Query: 456 --agagagagagagagagagagagagagagagagaga 490
|||||||||||||||||||||||||||||||||||
Sbjct: 479 ggagagagagagagagagagagagagagagagagaga 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
