BAC Information

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BAC

Clone NameMSMg01-337N05
Chromosome3 (Build37)
Map Location 62,547,507 - 62,547,844
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149
Downstream geneLOC676984, LOC666967, Mme, Plch1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337N05.T7 (MSMg01no337_n05.b1)MSMg01-337N05.TJ (MSMg01no337_n05.g1)
ACCAG452506AG452507
length759766
length of high quality
(start - end)		514 (46 - 559)463 (76 - 538)
definitionCHROMAT_FILE: MSMg01no337_n05.b1 PHD_FILE: MSMg01no337_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:19 2005CHROMAT_FILE: MSMg01no337_n05.g1 PHD_FILE: MSMg01no337_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTTAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGGCTTTCATCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTC
TGGATTAAAGTTTTAGGCCTGGCATGGGTGATTCCTCCCGAACTTTTTTT
TTTTCTTGATAAAACTTTTTGGTATCCTAACGCTTTTTTGTTTTCCCACA
ACAATTTTG

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGTGAACCAAGGAACATGCTA
TTGCATATATTCTCCATTGGTTTAATGATATAAAAGTACTTTAAAGCATA
TAAGAAGGACATCAAAAGGTTAGAGGAGCTAATCTGAAAAAGCTCCTCAT
GAGCTTATTATTTAAATGAAAAATAGCAATGGCTTGCACTATAACACAAT
ACAAGGAGCATCCCTGAGTCCACACTGATATATATCAATCACTTAATTTA
TCACCTGGTAAGAAGCCACATGTTCCGCACAGAATTTTAATAATAGAGTC
AGAGAAATGAGTGGAATCCAAAAATCACCATGAGATCAAAACTATAGCAG
ATAAAACTTTTCCCAGAAACTTTTATCAATGGGGGTTAAAATGAATGAAT
GAACATTTCAAGAGAAACATGTTATATGCTTCTTGAGTTCATTCCTTCTA
AGCTATTTCTAAAGTAAAAAAAAGTAAAAACATAGTGGCTCTGTGGTGGG
AAAGACCTGGCAGACATTTCCTGAACTTAAAAATAAAGGCCAAGATAGCA
AGTAATAAGACAGCATTGGCTTCAGCCTGTGTATGGGGGNTACCAAAAGG
GAAAAAAAACCTTTTTGGGGTGTAATTGGCCCGGAAAATTTACTTCCCCT
TATCCTTTGGAAAAAAAACAAATTGGGGAATATTTTCTAAAAAAATTCCC
ACGGGGTATCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_n05.g1 MSMg01no337_n05.g1 CHROMAT_FILE:
MSMg01no337_n05.g1 PHD_FILE: MSMg01no337_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:19 2005
         (463 letters)



>mm_chr3_62547507_62548369
          Length = 863

 Score =  623 bits (322), Expect = 0.0
 Identities = 334/338 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaagtgaaccaaggaacatgctattgcatatattctccattggtttaatgatataaaa 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cagaagtgaaccagggaacatgctattgcatatattctccattggtttaatgatataaaa 279

                                                                       
Query: 61  gtactttaaagcatataagaaggacatcaaaaggttagaggagctaatctgaaaaagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gtactttaaagcatataagaaggacatcaaaaggttagaggagctaatctgaaaaagctc 219

                                                                       
Query: 121 ctcatgagcttattatttaaatgaaaaatagcaatggcttgcactataacacaatacaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 218 ctcatgagcttattatttaaatgaaaaatagcaatggcttgcactataacagactacaag 159

                                                                       
Query: 181 gagcatccctgagtccacactgatatatatcaatcacttaatttatcacctggtaagaag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 158 gagcatccctgagtccacactgatatatatcaatcacttaatttatcacctggtaagagg 99

                                                                       
Query: 241 ccacatgttccgcacagaattttaataatagagtcagagaaatgagtggaatccaaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  ccacatgttccgcacagaattttaataatagagtcagagaaatgagtggaatccaaaaat 39

                                                 
Query: 301 caccatgagatcaaaactatagcagataaaacttttcc 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  caccatgagatcaaaactatagcagataaaacttttcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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