ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATCCACTATCTCCCTCATTTATTTAATCAAACAGTGTGATGGTTTGTA
TATGTTTGGCCTTGGCAGTGGCACTATTAGGAGGTGTGGTCTTGTTGGAG
TAGGTATGGCCTTGTTAGAGGAAGTGTGTCACTGTGAGGAGTGGTCTTTG
AGACCCTCCTCTTAGTTATGTGGGAGCCAGTCTTCTCCTGGCTTCCTTTG
AATGAAGATATAGAACACTCATCTTCTCCAGCACCATGTCTTCCTGGATG
CTGCCATGCTCTCACCTTGATGATAATGGACTGATCCTATGAACCTGTAA
GCCAGCCCCAATTAAAGATTGACCTTATAAGAGTTGCCTTGTCATGATGT
GTCTTCACAGCATTAAAACCCAAACTGAGACAGTCACATCCATTAAATAA
AGCATAGCAAATGAGTATTTACCGAGTAGTACTGTTTACATGGCAGAACA
GATCTTGGTGCTGGGGACATAGTGGGAATACAATAGGCAGGTCTTATGGG
GCTTGAGGCCCAGTGCTCTGTCTCTCTTCCCTGTCNAGGTCCTGGCCTCT
ATTTGGGACCCTTTCCCCCTGGTCTGATTTCCTCTGAACCGGTGGAAATT
CTTGCCTACCCTTCCATGGGTTCTTCGTCTTCTTGGACTTGGTAACCCCT
GAAGGGTTCTGGATTGGGCCGGCCATTTCCCTTTTTTGGGGGGATTGGCC
CCCCCCCTCAGA

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTACACCTCCTTGTGAAACTATTCCAAG
CAAGGACAGAGTACAGGAGAACAGTAAATGGAAGGGAGACTTCTGACACC
CACCCTTAACTTTAATAGTAGAAACTTTCATATATATAAAAGAAAAACTT
CATTTAAAAATATACTGCTAAAATACTCTATGAAATTTATAATTAGCTAG
TAACGTAGTTTTATCTACACAAACTTCAAAAGTGGACATTGAGTAGATAA
ATTATCTCACACCCAAAGTCACACTATCCCTAAAGAAAATAAAATGAAGT
GATTTCTATAAATTAATCTTTGAAGGTTTTTTTTAAATCTGGACAGAGCA
CCAGTGGGGTCATCATTTGGAGAGAAGGCAGAGTATCATGTTGGTCACAT
GCTGAGCTGCCTAAGATTCTCCTGTCCATCGCAGCCTTACATCAAGAAAG
GGTTTTCTGCTTCATTCAATCAAGAGTGCATTTTTGGCTATATTAGCACA
GCGTCATGAAAAATCCAATCATAATTTCTGATGGCTTATCAAATCACAAA
CTTTCACATCAAAGAAACGGGATGATAAACATACTAGTTAATGTCTAACA
ACACACACAAACCACAANNNNAANNNNATTNNAAAATTTGGGAGGAACCC
CAAAACCTATACAAGAAAAAATTTCCCTTAAGGTGGGAAAGTTTGTAAAC
TGAAATACCCG

Query= MSMg01no337_n24.g1 MSMg01no337_n24.g1 CHROMAT_FILE:
MSMg01no337_n24.g1 PHD_FILE: MSMg01no337_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:23 2005
         (468 letters)



>mm_chr3_83160534_83161403
          Length = 870

 Score =  890 bits (460), Expect = 0.0
 Identities = 467/470 (99%), Gaps = 2/470 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacacctccttgtgaaactattccaagcaaggacagagtacaggagaacagtaaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tttacacctccttgtgaaactattccaagcaaggacagagtacaggagaacagtaaatgg 611

                                                                       
Query: 61  aagggagacttctgacacccacccttaactttaatagtagaaactttcatatatataaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aagggagacttctgacacccacccttaactttaatagtagaaactttcatatatataaaa 551

                                                                       
Query: 121 gaaaaacttcatttaaaaatatactgctaaaatactctatgaaatttataattagctagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gaaaaacttcatttaaaaatatactgctaaaatactctatgaaatttataattagctagt 491

                                                                       
Query: 181 aacgtagttttatctacacaaacttcaaaagtggacattgagtagataaattatctcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aacgtagttttatctacacaaacttcaaaagtggacattgagtagataaattatctcaca 431

                                                                       
Query: 241 cccaaagtcacactatccctaaagaaaataaaatgaagtgatttctataaattaatcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cccaaagtcacactatccctaaagaaaataaaatgaagtgatttctataaattaatcttt 371

                                                                       
Query: 301 gaagg--ttttttttaaatctggacagagcaccagtggggtcatcatttggagagaaggc 358
           |||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gaaggtttttttttttaatctggacagagcaccagtggggtcatcatttggagagaaggc 311

                                                                       
Query: 359 agagtatcatgttggtcacatgctgagctgcctaagattctcctgtccatcgcagcctta 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agagtatcatgttggtcacatgctgagctgcctaagattctcctgtccatcgcagcctta 251

                                                             
Query: 419 catcaagaaagggttttctgcttcattcaatcaagagtgcatttttggct 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 catcaagaaagggttttctgcttcattcaatcaagagtgcatttttggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 870
Length adjustment: 10
Effective length of query: 458
Effective length of database: 860
Effective search space:   393880
Effective search space used:   393880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)