Query= MSMg01no338_a10.b1 MSMg01no338_a10.b1 CHROMAT_FILE:
MSMg01no338_a10.b1 PHD_FILE: MSMg01no338_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:34 2005
(614 letters)
>mm_chr3_144012185_144013197
Length = 1013
Score = 1075 bits (556), Expect = 0.0
Identities = 595/608 (97%), Gaps = 1/608 (0%)
Strand = Plus / Minus
Query: 5 gaattcacttatttgcgagctcgtcatgggggagcgagagcaaagtgtacagaagaacag 64
||||||||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct: 628 gaattcacttatttgagagctcgtcatgggggatcaagagcaaagggtacagaagaacag 569
Query: 65 ggctgagaatgggcaaaggagggggaaaaaaagacacaccattttgtttacacgtatttc 124
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggctgagaatgggcaaagga-ggggaaaaaaagacacaccattttgtttacacgtatttc 510
Query: 125 ttatttttaaaatctttcattagtatgtattaattaattgtacatagcaggttttatgat 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 509 ttatttttaaaatctttcattagtatgtattaattaattgtacagagcaggttttatgat 450
Query: 185 attttcctacatgtgcggaatgtgttttgattatatgtacttcctgacaccgcctcttgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 attttcctacatgtgcggaatgtgttttgattatatgtacttcctgacaccgcctcttgt 390
Query: 245 ccctcccccacccactctttgccttctctttctaaccagtctctttctgctcccttctgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ccctcccccacccactctttgccttctctttctaaccagtctctttctgctcccttctgt 330
Query: 305 gtccaggcagagatgcacctggccagtggctacactgctgaataagaagtcttcccccat 364
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 329 gtccaggcagagatgcacctggccagtggctacaccactgaataagaagtcttccctcat 270
Query: 365 caactgttatgcacaatgactctgcatcgtggatccttctgttactgtgtgccactcaag 424
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 269 caactgttatgcacaatgactctgcatcgtggatccttctgttactttgtgccactcgag 210
Query: 425 catccgaggaaaccgagtggggcacagagatatttagagatttcttcaaggcagcccagc 484
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 209 catccgaggaaaccgagtggggcacagtgatatttagagatttcttcaaggcagcccagc 150
Query: 485 taacacgggttgcagggcagagagattagagccaggaaatctgacttcagaaccagagct 544
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 149 taacacgggttgcagggcagagagattagagccaggacatctgacttcagaaccagagct 90
Query: 545 tgttgtcctactgtgtgcacgtgggggcacactagccctgagcacagagaatatgctgtt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 tgttgtcctactgtgtgcacgtgggggcacactagccctgagcacagagaatatgctgtt 30
Query: 605 cctttttt 612
||||||||
Sbjct: 29 cctttttt 22
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1013
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1003
Effective search space: 605812
Effective search space used: 605812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_a10.g1 MSMg01no338_a10.g1 CHROMAT_FILE:
MSMg01no338_a10.g1 PHD_FILE: MSMg01no338_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:34 2005
(600 letters)
>mm_chr3_143847364_143848363
Length = 1000
Score = 1050 bits (543), Expect = 0.0
Identities = 586/603 (97%), Gaps = 6/603 (0%)
Strand = Plus / Plus
Query: 1 ttacaggaagtat---agtgagacatgcaaggtttatggcaactgtcagtttgacgaaag 57
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ttacaggaagtatcatagtgagacatgcaaggtttatggcaactgttagtttgacgaaag 260
Query: 58 aaattgaatcagaagccttaaaggaatgttcaagtttgacaatacccatcgccagcaaag 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaattgaatcagaagccttaaaggaatgttcaagtttgacaatacccatcgccagcaaag 320
Query: 118 ttctaaagaaaagggcaaaccactcagacgatcaattttcctttccagcttccataatta 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctaaagaaaagggcaaaccactcagacgatcaattttcctttccagcttccataatta 380
Query: 178 atcttcatttggaaattcagtttttcctgagattcttttgctttctaaaacagacaattc 237
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 381 atcttcatttggaaattcagttggtcctgagattcttttgctatctaaaacagacaattc 440
Query: 238 atacaaagtgaacaattaatttaggaagaacgtctttagtgttttctcaaagacgaagaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 atacaaagtgaacaattaatttaggaagaacgtctttagtgttttctcaaagaagaagaa 500
Query: 298 aaaaaagagagagagctcacacaacacaggggaaattatatatggagggaaatggttttt 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 aaaaaagagagagagctcacacaacacaggggaaattatatatggagggaaatgattttt 560
Query: 358 tttttttttttgaaagttgaagtcataaacttttcttccaggtagagagatctttctgga 417
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttttt---gaaagttgaagtcataaacttttcttccaggtagagagatctttctgga 617
Query: 418 ctgaaggaaggtgagacacctgcttggattagctaatgattgtccttaacctggttaaaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctgaaggaaggtgagacacctgcttggattagctaatgattgtccttaacctggttaaaa 677
Query: 478 ttcagcactaactccacctttaaacagaacttctgcaatatgccctctctaaggctctta 537
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
Sbjct: 678 ttcagcactaactccacctttaaacacaacccctgcaatatgccctctctaaggctctca 737
Query: 538 catcaatgccccacatcttccctgaaacctttctgtacttggcaagccccaactttacag 597
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 catcaatgccccgcatcttccctgaaacctttctgtacttggcaagccccaactttacag 797
Query: 598 ttc 600
|||
Sbjct: 798 ttc 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
