Query= MSMg01no338_a18.b1 MSMg01no338_a18.b1 CHROMAT_FILE:
MSMg01no338_a18.b1 PHD_FILE: MSMg01no338_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:36 2005
(365 letters)
>mm_chr3_52728191_52728955
Length = 765
Score = 571 bits (295), Expect = e-167
Identities = 354/387 (91%), Gaps = 22/387 (5%)
Strand = Plus / Minus
Query: 1 tcattttgtggcttcatggttgttttctgtggttgcaattattgtacccttctttcacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tcattttgtggcttcatggttgttttctgtggttgcaattattgtacccttctttcacta 428
Query: 61 gaaacaaatggataagatgtccaactactggcctgtttcagatgcaaatgtgaagagtat 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaaacaaatggataagatgtccgactactggcctgtttcagatgcaaatgtgaagagtat 368
Query: 121 cccaggttacagagcgaacgctgagaaaagagattcatgagaaaggtaattaatcaacca 180
|||||||||||||||||| ||| |||||||||||||| || |||||||||||||||||||
Sbjct: 367 cccaggttacagagcgaatgctcagaaaagagattcacgacaaaggtaattaatcaacca 308
Query: 181 cggttacactccaaaaagatttcctacatacaaagtttctagttctttaatatgtggtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cggttacactccaaaaagatttcctacatacaaagtttctagttctttaatatgtggtgg 248
Query: 241 aagatgggtgtatgggtttcactggtctgattcttctaattctgacag--tttctctctc 298
|||||||| | ||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 247 aagatggggggatgggtttcaccggtctgattcttctaattctgacacaatttctctctc 188
Query: 299 tctctctctctctctctctctctctct--------------------gcaatattattca 338
||||||||||||||||||||||||||| |||||||||||||
Sbjct: 187 tctctctctctctctctctctctctctctctctctctctctctctctgcaatattattca 128
Query: 339 tgggcaacagtgttgtgtgtgtgtgtg 365
|||||| ||||| ||||||||||||||
Sbjct: 127 tgggcagcagtggtgtgtgtgtgtgtg 101
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space: 269136
Effective search space used: 269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_a18.g1 MSMg01no338_a18.g1 CHROMAT_FILE:
MSMg01no338_a18.g1 PHD_FILE: MSMg01no338_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:36 2005
(594 letters)
>mm_chr3_52543254_52544247
Length = 994
Score = 961 bits (497), Expect = 0.0
Identities = 559/595 (93%), Gaps = 25/595 (4%)
Strand = Plus / Plus
Query: 1 atttccataggcaaataataattctcataa-tttttttctccttaccatgtgcatgtgtg 59
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 224 atttccataggcaaataataattctcataaatttttttctccttaccatgcgcatgtgtg 283
Query: 60 agtgagagagagagagagagagagagagagagagagagagagagagagagagagttataa 119
|||||||||||||||||| | | | | | | ||||||
Sbjct: 284 agtgagagagagagagagtgtgtgtgtgtg------------------------ttataa 319
Query: 120 gacagctttgtgaagtacttcccttttccacccatgtgtagaatctagaggccaaatgca 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 320 gacagctttgtgaagtacttcccttttccacccatgtgtagaatctagaggccaaacgca 379
Query: 180 ggtgaccaggtttgagcagcaagtcccttcctctgctgagccatcttgccagctctgcct 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 380 ggtgaccaggtttgagcagcaagtcccttcctctgctgaaccatcttgccagctctgcct 439
Query: 240 ttaactcgtgctgtgctggaatgataggtgctggtgtttgtggccagcaggctgaatttc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttaactcgtgctgtgctggaatgataggtgctggtgtttgtggccagcaggctgaatttc 499
Query: 300 aactgtcgtctacagtgtggctgtaggtaagttaaacttgctctgtgcttcttctctctt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aactgtcgtctacagtgtggctgtaggtaagttaaacttgctctgtgcttcttctctctt 559
Query: 360 acaactaaagtggaaatactaaagagatctgtcttaaagagtccctgtggggttgcgtga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acaactaaagtggaaatactaaagagatctgtcttaaagagtccctgtggggttgcgtga 619
Query: 420 gttaagacacataagatattcatcagatcatatgctggcatattttctccatcatttcgt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gttaagacacataagatattcatcagatcatatgctggcatattttctccatcatttcgt 679
Query: 480 cctttttatatttattgataaaacaatacacaaacaaagcagaaccaggacagctgttgg 539
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 680 cctttttatatttattgataaaacgatacgcaaacaaagcagaaccaggacagctgttgg 739
Query: 540 tcaaataaacaaaccaggaaagggatgcttgacgcttccttatgatagagtctaa 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcaaataaacaaaccaggaaagggatgcttgacgcttccttatgatagagtctaa 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
