TTTATCTCATGTCACTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTTTGTTGATCTCTCACAAAGAAGAGGAGTAAACATATTGAATTCCTG
GTGTGGGCTAAAATTTGGTGATATCCACTGGCCAATGGGAAATTTTCAAA
GATGCTTGTTATGCACAAACATATTGGTTTTGTAGGCTGATGCACAGTTG
ATTTAACCCAGGAACTTAATCATCTTGTGTAAACATCCTAGCTTTGTGGA
TTGGTCTGGGCCTTGTAATAAGATTGAGGGACTATACTGATACCATTCAG
TTGATTCATGGAATCAAATTGAAGATCCAGAAGTAAACCCATACAGCTAT
AAACACTTGATTTTTTGTAAAGAAGCCAAAACTATAAAGTGGAAAAATAA
AGCATCTTCAACAAATAGTCCTGGTCTAACTGTATGTCTACATGTAGAAG
AATGCAAATAGATCCATATCTATCACCCTGCACAAAACTCAAGTCCAAGT
GGATCAAAGACCTTAACATAAAACTGGATACACTAAGTTTGAGAAAAGAG
AAAGTGGGCAATATCCTTGAACCCATAGGTATAGAAAACAACTTCCTTAA
CAGAACACCAACAGCTCAGGCACTAAGATCAATAATTTCTAAATGGGACC
TCATGAAACTGGAAAGCATCTGTAAGGCAAAAGACACTGTCAATAGGACA
AAACAGCAGCCTACAGAATGGAAAAGATTTTTTAATTAACCTTTTTATTT
GTTACATCT

CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCAACTGAGGAAGCTTGAATGGTGGAGAAGAA
CCTAAAGAAATCTTCAACATTCTTAGTCATCAGGGAAACACATACCAAAA
GAACCCTGAGCTTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAATC
TCAGGTCACAGCAGATGCTGGCAAACATGTANAGAAAGATGAACACTCCT
CCAGTTTTGGTGGAATTGCAAGCTGGTNAAACTACTCTGGAAATCATTCT
GGCATTTCCTCCAAAAATTGGAATAAAAATTAACATCCTGGGCCTTATTC
CCAAAAAAGTTCCACATGAAAAAAGGGATTTTTCCAAGGCAAATTTCCTT
TCTATTTGTAAAACAAAGGGTAAAAAAATTTTTCCTTTTTTTTTTTTCCC
CCAAAAAACCCCCCCCCAAAAAAACCCCCCTTTTTTTTAAAACCGCTCTN
NNCCCCTAAATTTAAAAAAACCCCNNNAAAAATATAAAAAGGAGAAAAAA
AATTTNNNNNNNNCTCNCCTTTTTTTTTTTCCCTTTTTTTTTTTTTTNNC
TCTTTTTCCGCGGGTGGGGGGGGGNNNNNNNNATNNNNNNNNCCCCCCCC
CCCCAAAAAAAAANNNNNNNATTTTTATATGGGGGACATCTCCCCCCGCT
GGNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGCCTTN
NNNAAGTCTCTCCNNNNCAAGGGNCCCCNGCN

Query= MSMg01no338_k11.b1 MSMg01no338_k11.b1 CHROMAT_FILE:
MSMg01no338_k11.b1 PHD_FILE: MSMg01no338_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:20 2005
         (619 letters)



>mm_chr3_159136081_159137099
          Length = 1019

 Score = 1143 bits (591), Expect = 0.0
 Identities = 609/615 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttgttgatctctcacaaagaagaggagtaaacatattgaattcctggtgtgg 64
           ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattactttgttgatccctaacaaagaagaggagtaaacatattgaattcctggtgtgg 264

                                                                       
Query: 65  gctaaaatttggtgatatccactggccaatgggaaattttcaaagatgcttgttatgcac 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctaaaatttggtgatatccactggccaatgggaaattttcaaagatgcttgttatgcac 324

                                                                       
Query: 125 aaacatattggttttgtaggctgatgcacagttgatttaacccaggaacttaatcatctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaacatattggttttgtaggctgatgcacagttgatttaacccaggaacttaatcatctt 384

                                                                       
Query: 185 gtgtaaacatcctagctttgtggattggtctgggccttgtaataagattgagggactata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtaaacatcctagctttgtggattggtctgggccttgtaataagattgagggactata 444

                                                                       
Query: 245 ctgataccattcagttgattcatggaatcaaattgaagatccagaagtaaacccatacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgataccattcagttgattcatggaatcaaattgaagatccagaagtaaacccatacag 504

                                                                       
Query: 305 ctataaacacttgattttttgtaaagaagccaaaactataaagtggaaaaataaagcatc 364
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 505 ctataaacacttgattttttgtaaagaagccaaaactataaagtagaaaaataaagcatc 564

                                                                       
Query: 365 ttcaacaaatagtcctggtctaactgtatgtctacatgtagaagaatgcaaatagatcca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcaacaaatagtcctggtctaactgtatgtctacatgtagaagaatgcaaatagatcca 624

                                                                       
Query: 425 tatctatcaccctgcacaaaactcaagtccaagtggatcaaagaccttaacataaaactg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatctatcaccctgcacaaaactcaagtccaagtggatcaaagaccttaacataaaactg 684

                                                                       
Query: 485 gatacactaagtttgagaaaagagaaagtgggcaatatccttgaacccataggtatagaa 544
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 685 gatacactaagtttgagaaaagagaaagtgggcaatatccttgaacccgtaggtatagaa 744

                                                                       
Query: 545 aacaacttccttaacagaacaccaacagctcaggcactaagatcaataatttctaaatgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aacaacttccttaacagaacaccaacagctcaggcactaagatcaataatttctaaatgg 804

                          
Query: 605 gacctcatgaaactg 619
           |||||||||||||||
Sbjct: 805 gacctcatgaaactg 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)