XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGG
TTTTCTGCCAATTATTATTTTTTTCCAAAATATATTGTGTTTTTTAAAAG
TTTTAAATATTTTATTGTTCATTCAGATAGAGAAGAATCACTTTCCAAAC
ATGTTCATTTGCTATTAATTATGAATATCATGAAACTGAGATGGTGGTAT
TATTTTTGTAAAGTATCTTTACATTATTTTTTGATATGTGTTATAATAAC
CATTGACTGCTGTTCCTCCTGACTAATTTCATGCATCTTAAAAGTTTTCT
ACATAAAAGCTGGTGTGTCTCTACATTTTCTTTGAAAGATATATCATATG
TACTAGAGAGCATGATATTCACTTATATATGTTTTAATATTCAAATTGTA
TGAGCAGGGGACAGTAAAGAAACCACCAAAAGAATAGCAAGCAATCCAAA
TGTCTATTGATCTATCATCTATCTGTCTATAATCTATCTCTTGCCTATAT
AACTTTGATATTCATATGTATAGTTGTGAAAATATGTTATTCCTTATGAA
GACTTATGGTTCATCAATTGTTTGAAAACAATTTGAAGCCTCTAAGTGTA
AGGAAAGGCAATCAAAGCATGTGTCACTGTGTGAGGTGGCATGAGCCATA
GACTATGAGCATCGCAATGGTCCTTCAGCCTGACTACTATGGAATCCTCA
GACTTCAGTAGNTTATCTACCAACTGTAGTCACCAGTTTGATGTTCAGGT
GN

TGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAACA
CCTGAAAAAATGTTCAACATCCTTAATCATTAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAC
TCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCT
GGCGGTTCCTCAGAAAATTCGACATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CACATTCACAAAGGAACTCACACAATATATACTTCACTGATAAGTGGATA
TTAGTCCTCAACCTATAATACCCCAGATATAAGATATAATTTGCTAAACC
CATGAAAACTCTAGAATCAACCAAGACTGATGTGTGGACACTAG

Query= MSMg01no338_m03.b1 MSMg01no338_m03.b1 CHROMAT_FILE:
MSMg01no338_m03.b1 PHD_FILE: MSMg01no338_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:28 2005
         (692 letters)



>mm_chr3_49131701_49132792
          Length = 1092

 Score = 1301 bits (673), Expect = 0.0
 Identities = 684/688 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctggttttctgccaattattatttttttccaaaatatattgtgttttttaaaa 64
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggttttcagcaaattattatttttttccaaaatatattgtgttttttaaaa 264

                                                                       
Query: 65  gttttaaatattttattgttcattcagatagagaagaatcactttccaaacatgttcatt 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttttaaatattttaatgttcattcagatagagaagaatcactttccaaacatgttcatt 324

                                                                       
Query: 125 tgctattaattatgaatatcatgaaactgagatggtggtattatttttgtaaagtatctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgctattaattatgaatatcatgaaactgagatggtggtattatttttgtaaagtatctt 384

                                                                       
Query: 185 tacattattttttgatatgtgttataataaccattgactgctgttcctcctgactaattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacattattttttgatatgtgttataataaccattgactgctgttcctcctgactaattt 444

                                                                       
Query: 245 catgcatcttaaaagttttctacataaaagctggtgtgtctctacattttctttgaaaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catgcatcttaaaagttttctacataaaagctggtgtgtctctacattttctttgaaaga 504

                                                                       
Query: 305 tatatcatatgtactagagagcatgatattcacttatatatgttttaatattcaaattgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatatcatatgtactagagagcatgatattcacttatatatgttttaatattcaaattgt 564

                                                                       
Query: 365 atgagcaggggacagtaaagaaaccaccaaaagaatagcaagcaatccaaatgtctattg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgagcaggggacagtaaagaaaccaccaaaagaatagcaagcaatccaaatgtctattg 624

                                                                       
Query: 425 atctatcatctatctgtctataatctatctcttgcctatataactttgatattcatatgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atctatcatctatctgtctataatctatctcttgcctatataactttgatattcatatgt 684

                                                                       
Query: 485 atagttgtgaaaatatgttattccttatgaagacttatggttcatcaattgtttgaaaac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atagttgtgaaaatatgttattccttatgaagacttatggttcatcaattgtttgaaaac 744

                                                                       
Query: 545 aatttgaagcctctaagtgtaaggaaaggcaatcaaagcatgtgtcactgtgtgaggtgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aatttgaagcctctaagtgtaaggaaaggcaatcaaagcatgtgtcactgtgtgaggtgg 804

                                                                       
Query: 605 catgagccatagactatgagcatcgcaatggtccttcagcctgactactatggaatcctc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 catgagccatagactatgagcatcgcaatggtccttcagcctgactactatggaatcctc 864

                                       
Query: 665 agacttcagtagnttatctaccaactgt 692
           |||||||||||| |||||||||||||||
Sbjct: 865 agacttcagtagtttatctaccaactgt 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)