BAC Information

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BAC

Clone NameMSMg01-338N14
Chromosome3 (Build37)
Map Location 83,065,623 - 83,066,046
singlet/doubletsinglet
Overlap geneDchs2
Upstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094
Downstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338N14.T7 (MSMg01no338_n14.b1)MSMg01-338N14.TJ (MSMg01no338_n14.g1)
ACCAG453279AG453280
length741734
length of high quality
(start - end)
654 (38 - 691)490 (71 - 560)
definitionCHROMAT_FILE: MSMg01no338_n14.b1 PHD_FILE: MSMg01no338_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:34 2005CHROMAT_FILE: MSMg01no338_n14.g1 PHD_FILE: MSMg01no338_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGGCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAATTCTC
ACCGTTGCCTACCGAATGGCTGAGAAGCACCTGAAACAATGTTCAGCATC
CTTATTCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCA
CACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGG
CTAGGATGTGGAAAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAA
GCTTGTACAACCACTCTGGAAATCAGTCTGGAGGTTCCTCAGAAAACTGG
ACATAGTACTACCATATGATCCCGCAATACCTCTCCTGGGCATATATCCA
GAAGATGTTCCAACCGATAAGAAGGACACATGCTCCACTATGTTCATAGT
AGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAA
CAGAGGAATGAATACAGAAAATGTTGTACATTTACACAATGGAGTACTAC
TCAGATATTAAAAAGAATGAATTTATAAAATTCCTAGGCAAATGGATGGA
CCTGGAGGGCATCATCCTGAGTGAGGTAACACAATCACACAGGAACTCAC
ATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATAC
CCAAGATATAAAATACAATTTGCCAAATGCAGGAAACTCTAGAAGAACGA
AAACCAAAGTGTGGACACTGTGCCCCTTCTTAGAATTGGGA
GCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTCAGATAAAGATCCAAGCTCACCGTTCA
AAAAGAAAAAGGAAGAAGAATGGGGAATTACGTTAGCATAGATGAATCTG
AGAAATAATGGTGGAGTTAACTAGGAAATGACTTTAAGAAAACAGACAAA
TGCTAGAGTTAAGACAAATGTTTCAAAGTTAATTCAGTCATGCATTCCTC
GTAGGAAACGGAGCTCAGGGGAGATGGACCCATCAGTGAGGCTCAGATCC
CCAGCATGCATGGAAATGCCAGCGTGGAAGTATGAGCCGGGATCCTAGTG
GTAGCACAAGTTCGTGAACCTAGTGCTGGGAGATGCAGGCGGAGGTCAGC
CTTTCTCAGCACGTCAGCCAGCTCCAGTGTCAGTGAGAGAACCTGGCTCC
AAACTGAAGTCCAGAGCTCTAGAATACAGTGGATGGAAACCTCTGACTTC
CACATGTATGCACACACACATTCACTCGCATATATATATATATATATATA
TATACACATGCACACACATATAAACATACACATATACACACAGATACACA
CACCCAACAGAAACAATACTTCTAAAATACCCTCCAGTTAGTTACACCTG
CTCTACTTTACTGCTCTGTTCTTATGGACCGCCCCCATTATACCTGGATT
ATCTTAAGATCTATATTTTCTGTTTAAAACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_n14.g1 MSMg01no338_n14.g1 CHROMAT_FILE:
MSMg01no338_n14.g1 PHD_FILE: MSMg01no338_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:34 2005
         (490 letters)



>mm_chr3_83065623_83066516
          Length = 894

 Score =  739 bits (382), Expect = 0.0
 Identities = 412/424 (97%), Gaps = 4/424 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcagataaagatccaagctcaccgttcaaaaagaaaaaggaagaagaatggggaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tctcagataaagatccaagctcaccgttcaaaaagaaaaaggaagaagaatggggaatta 365

                                                                       
Query: 61  cgttagcatagatgaatctgagaaataatggtggagttaactaggaaatgactttaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cgttagcatagatgaatctgagaaataatggtggagttaactaggaaatgactttaagaa 305

                                                                       
Query: 121 aacagacaaatgctagagttaagacaaatgtttcaaagttaattcagtcatgcattcctc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 304 aacagacaaatgctagagttaagacaaacgtttcaaagttaattcagtcgtgcattcctc 245

                                                                       
Query: 181 gtaggaaacgga----gctcaggggagatggacccatcagtgaggctcagatccccagca 236
           ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 244 gtaggaaacggaatgtgctcaggggagatggacccatcagtgaggctcagatccccagcg 185

                                                                       
Query: 237 tgcatggaaatgccagcgtggaagtatgagccgggatcctagtggtagcacaagttcgtg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 184 tgcatggaaatgccagcgtggaagtatgagccgggatcctagtggtagcacgagctcgtg 125

                                                                       
Query: 297 aacctagtgctgggagatgcaggcggaggtcagcctttctcagcacgtcagccagctcca 356
           | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 124 atcctagtgctgggagatgcaggcagaggtcagcctttctcagcacgtcagccagctcca 65

                                                                       
Query: 357 gtgtcagtgagagaacctggctccaaactgaagtccagagctctagaatacagtggatgg 416
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 64  gtgtcagtgagagaacctggctccaaattgaagtccagagctctagaatacagtggatgg 5

               
Query: 417 aaac 420
           ||||
Sbjct: 4   aaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 894
Length adjustment: 10
Effective length of query: 480
Effective length of database: 884
Effective search space:   424320
Effective search space used:   424320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)