TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTGTTATGCCAAATGAATCATTATCCTTCAAAATAATACCCGGTGCTT
CTTTGTTGCCTATATACTGCTGAAGTAATTAGCAACTTTTCTACCACATG
CTCTAAGAAACAACTTATGACCTACTTCTATTTATTTGGTTATTCAAAAA
AATATTTATTAAACATTTATTTCTACAGATAACTAAAATGACCTATCTAC
TGTCTTATGCATCTTGAACTCATTGTGCACAGCAATGCTATAAAGGACAT
GATTTGCTTGCCTACGACAGTGATAATGGAATATATGTGCCTCTCTCCAG
TTTCTTACAGGCATAGAGAAGCACCAGTGAGAGTTTTGACCTTATAGAAA
TTGATAGATAAGTTCTTCTAAGACAAGTTCCTACAAGATGGCTATTGTTG
ATGTCAGCAATGGAAACACTATTAGAATAATGCTGTATTAAAATCCCATT
TCACAATGTGGGCCAAGAGGATTTTATTTTCTAATTCAGAAATATATTAA
GGAGGAAATGAAGAAAGGAATTTCAGTAAAGCAAAAAACTCATATGTTGA
TTATCTCCACCCCCTGGAAAGGTCCCTAAGGCTTCTAGAANAGAAAAGAA
CCAATCCTAACTGAATGGGTATAATTGTTATGTATGTTGTAGAGAAAAAA
TAACTAAATTAATAAGGGAAACATCCTCCAAGGAGGGAGAGAATCCGGGA
TGGAAA

CATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTT
AATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATA
TATTGGATATTAATTCCATGTCTGACTTAGGATAGGTAAAGATCCTTTCC
CAATCTGTTGGTGGCCTTTTGTCTTATTGATGGTGTCTTCTGCCTTACAG
AAGCCTTGCAATTTTATGAGGTCCCGTTTGTTGATTCTCGATCTTATAGC
ACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATATCTT
CGAGACTTTTCTCCACTTTCTCCTCTATAAGTTTCACTGTCTCTAGTTTT
ATGTGGAGTTCCTTAATCCACTTAGATTTGACCTCAGTTCAAGGAGATAG
GAATGGATCAATTTGCATTCTTCTTCAAGATAACCGCCAGTTGTGCCAGC
ACCATTTGTTGAAAATGCTGTCTTTTTCCCACTAGATGGTTTTAGCTCCC
TGTCAAAGATCAAGAGATCATAGGTGTGTGGGTTCATTTCTGGGTCTTCA
ATTCTATTCCATTTGTCTACTTGTCTGTTGCTATACTAGTACCCTGCAGT
TTTTATCACAATTGCTCTGTACTACAGCTTTAAGTCAGGCATGGTGATTC
CCCCCAGGCTCTTTTATCCTTGN

Query= MSMg01no338_n17.b1 MSMg01no338_n17.b1 CHROMAT_FILE:
MSMg01no338_n17.b1 PHD_FILE: MSMg01no338_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:35 2005
         (582 letters)



>mm_chr3_99514118_99515100
          Length = 983

 Score = 1081 bits (559), Expect = 0.0
 Identities = 574/581 (98%), Gaps = 5/581 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgttatgc---caaatgaatcattatccttcaaaataatacccggtgcttct 61
           |||||||||||||  |   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgtta--cagacaaatgaatcattatccttcaaaataatacccggtgcttct 262

                                                                       
Query: 62  ttgttgcctatatactgctgaagtaattagcaacttttctaccacatgctctaagaaaca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttgttgcctatatactgctgaagtaattagcaacttttctaccacatgctctaagaaaca 322

                                                                       
Query: 122 acttatgacctacttctatttatttggttattcaaaaaaatatttattaaacatttattt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acttatgacctacttctatttatttggttattcaaaaaaatatttattaaacatttattt 382

                                                                       
Query: 182 ctacagataactaaaatgacctatctactgtcttatgcatcttgaactcattgtgcacag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctacagataactaaaatgacctatctactgtcttatgcatcttgaactcattgtgcacag 442

                                                                       
Query: 242 caatgctataaaggacatgatttgcttgcctacgacagtgataatggaatatatgtgcct 301
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 443 caatgctataaaggacatgatttgcttgcctgcgacagtgataatggaatatatgtgcct 502

                                                                       
Query: 302 ctctccagtttcttacaggcatagagaagcaccagtgagagttttgaccttatagaaatt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctctccagtttcttacaggcatagagaagcaccagtgagagttttgaccttatagaaatt 562

                                                                       
Query: 362 gatagataagttcttctaagacaagttcctacaagatggctattgttgatgtcagcaatg 421
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 563 gatagataagttcttctaagacatgttcctacaagatggctattgttgatgtcagcaatg 622

                                                                       
Query: 422 gaaacactattagaataatgctgtattaaaatcccatttcacaatgtgggccaagaggat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaaacactattagaataatgctgtattaaaatcccatttcacaatgtgggccaagaggat 682

                                                                       
Query: 482 tttattttctaattcagaaatatattaaggaggaaatgaagaaaggaatttcagtaaagc 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tttattttctaattcagaaatatattaaggaggaaatgaagaaaggaatttcagtaaagc 742

                                                    
Query: 542 aaaaaactcatatgttgattatctccaccccctggaaaggt 582
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aaaaaactcatatgttgattatctccaccccctggaaaggt 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 983
Length adjustment: 10
Effective length of query: 572
Effective length of database: 973
Effective search space:   556556
Effective search space used:   556556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)