BAC Information

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BAC

Clone NameMSMg01-338O09
Chromosome3 (Build37)
Map Location 18,506,842 - 18,506,962
singlet/doubletsinglet
Overlap genenone
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338O09.T7 (MSMg01no338_o09.b1)MSMg01-338O09.TJ (MSMg01no338_o09.g1)
ACCAG453317AG453318
length717759
length of high quality
(start - end)
617 (22 - 638)121 (73 - 193)
definitionCHROMAT_FILE: MSMg01no338_o09.b1 PHD_FILE: MSMg01no338_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:38 2005CHROMAT_FILE: MSMg01no338_o09.g1 PHD_FILE: MSMg01no338_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGACTCCTATATTCAGAGGATCCGCGGAATTCTCACCTGTGGCATACCGA
ATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACAGCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGAGTGTAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTATCGT
TGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGAAACTCACGCAATATGTATTCAC
TGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATAT
AATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGAC
ACTATGTCCCTCCTTAG
ATACTTTGNNAANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGTGTCACTTAGCTATCAAATTACTAC
TTTTCAAATAAAAAGACCAAACTTAACAACATGAAAGCACTCCAGGACAA
AAGATAAAGTAAGCGTTACATTCTTTAATATGCATTGAATATTTGATTAA
CTTGCAAGAATAAAGGGTGAAGTANAGAACTGAACTTATAAAAAAACTTG
GGCTTACCAAAATAAATTTTTAGGCGAGGGGGGAGGGGGGGGGGGCGGGG
GGGGGGCGGCAGGGGAGCGGGGGCTGGGGGCNATTAAAAGNNGGGGAAAG
GGAGAAAAGAACGGGGGCAGGCGGGGGGGGGGGGGCGGGTNNNTTNTNNT
TTNNNNGGGGTCCCNCCTNNNNNNNNNNNNGAAAAAAAATTGGGGGGGGC
GAGCCCCCACCCAAAAAANNTTTTTTTTNNCATAGAATTTTTTTATNTTN
NNTNNTTTTTTTTTTNNCTTAACCCCCNCCTCCCCTCTCCCNCCCCNNNN
NNNNNNAAAAAAANNNNNNNCCNCNCCCCACCCCCCCCCTCCCCTTTCCC
CTTTCTCCCCCCTCCCCTTTTTTTTCTTTCCCTTTCCCTACTCATAAAAA
CACACCTAAAATATCTTATCTTCCATCCCCCTCATTCACATTTATCTTTA
TATCTTTTTACTCTTTTACTCTTTTCTCCTTCCTTTATCCAATGAATATA
TGTAGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_o09.g1 MSMg01no338_o09.g1 CHROMAT_FILE:
MSMg01no338_o09.g1 PHD_FILE: MSMg01no338_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:38 2005
         (121 letters)



>mm_chr3_18506642_18507162
          Length = 521

 Score =  226 bits (117), Expect = 3e-64
 Identities = 120/121 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgtcacttagctatcaaattactacttttcaaataaaaagaccaaacttaacaacat 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 cagtgtcacttagctatcaaattactacttttcaaataagaagaccaaacttaacaacat 260

                                                                       
Query: 61  gaaagcactccaggacaaaagataaagtaagcgttacattctttaatatgcattgaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaagcactccaggacaaaagataaagtaagcgttacattctttaatatgcattgaatat 320

            
Query: 121 t 121
           |
Sbjct: 321 t 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 521
Length adjustment: 8
Effective length of query: 113
Effective length of database: 513
Effective search space:    57969
Effective search space used:    57969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)