NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATCTAATATCTAGCTGTGAGTTCCTGCATCTGTTTCTGTAAGC
TGCTGGGTGGAGCCTCTTATAGTACAGTTATGCTAGACTTCTGTTTGTAA
GCATAACAGAGTACTATCAAGGAGTGCTTCTTCCCATTAAGTAGGGTTTC
ATGTTGGGTCAGTCATTAGTAGGCCTGTCTCTCAATCTCAGTTTCATCTT
TGTCCCTGCACTTCTTGTAGGTAGGACACAATTTGGGTCAAATGTTTGTG
GGTGGCTTGGTATCCTTATCGATCCACTGGGAGTCCTGCCTGGTTATAGG
AGATGGCCACTTCAGGTTCAGTATCCCTTACTTCTAGAAGCCTAAGCTAG
AGTCACTCTCATACACTCCTTGGAGCTTCCCCAATCCCAGGTCTCTGGAA
AGTTCTAGAGATGACCTTCTCCCTTAGATTTCTATTCATTTTCCTGACCT
TCTTTCATTAGCTGTCCCTATAACTAATCCCACCACCCCATTCCTCTCCC
CATGACCTCACCTGCTCTATTCCCTATTCCCGTCCATGGCTAATTATTAT
TTCATTCCCCCTATGCCCTAGTTGTTATTTAGCATCTTTGGGTCTGTGGT
TATGCTGTGCATTATGGTTAATATTTACTTCTAAGTGAGTACATACCATG
CAAGTAAGTGCATAACATGTATGTCCTTN

AGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTTATAGACCAGGCTGGCCTCTCGA
ACTCAGAAATCTGCCTCTACCTCCCAGCCATAACTCCTTTCTAAAGTAAT
TAATTTTCTCTTGCAGTTAATCTACTTGGCCTCATTGTACTGTTTAAATT
ATATAAACAATTGTAAGCTATATTTATTGTAATGATTTATTTTTATAGAA
AAATCAAAACAATCTGAGGGAAATGCTTTGATATTATTTTACAATAATAA
TAATGGTACCAATAACACCATCCTAAAACAGTTTACTACTAGAAAATGCA
CTACCTGAGAATTATATGTTCATAAAGAGTTGGTTTTGCACAACCTTTAC
CTTGTGAATTAACTCAGTGTATGCCTGACTCTGTTTAAATTCACTGCCCT
AGTAGTAACTCACAATGTAGTGGTTTCTCCGGTCTTGTTTACCAGACAAT
GTTTGTTACAGCAAAAATTTAAAAGAAAAATTCAGGGTGATTTCAATGTT
GGCTTCTGTTCATTTGCAAGTGTAATATAGATCTTTATATATGATTCATA
TATCAGGATGCACTTGACTGTCTATAAGTGCTATACTTTAGACACAGGAC
TTAAATAGCTCATTGCATGAGAAGTATCAAACTGATTAAGAACATGTTTA
TTTATCTTGAGCG

Query= MSMg01no338_p05.g1 MSMg01no338_p05.g1 CHROMAT_FILE:
MSMg01no338_p05.g1 PHD_FILE: MSMg01no338_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:41 2005
         (587 letters)



>mm_chr3_113810300_113811286
          Length = 987

 Score = 1067 bits (552), Expect = 0.0
 Identities = 579/588 (98%), Gaps = 2/588 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttatagaccaggctggcctctcgaactcagaaatctgcctctacctcccagccataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 201 actttatagaccaggctggcctctcgaactcagaaatctgcctctacctcccaaccatat 260

                                                                       
Query: 61  ctcctttctaaagtaattaattttctcttgcagttaatctacttggcctcattgtactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctttctaaagtaattaattttctcttgcagttaatctacttggcctcattgtactgt 320

                                                                       
Query: 121 ttaaattatataaacaattgtaagctatatttattgtaatgatttatttttatagaaaaa 180
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ttaaattatataaacagttgtaagctatatttattgtaatgatttatatttatagaaaaa 380

                                                                       
Query: 181 tcaaaacaatctgagggaaatgctttgatattattttacaataataataatggtaccaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaaacaatctgagggaaatgctttgatattattttacaataataataatggtaccaat 440

                                                                       
Query: 241 aacaccatcctaaaacagtttactactagaaaatgcactacctgagaattatatgttcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaccatcctaaaacagtttactactagaaaatgcactacctgagaattatatgttcat 500

                                                                       
Query: 301 aaagagttggttttgcacaacctttacct-tgtgaattaactcagtgtatgcctgactct 359
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 501 aaagagttggttttgcacaacctttac-tgtgtgaattaactcagtgtatgcctgactct 559

                                                                       
Query: 360 gtttaaattcactgccctagtagtaactcacaatgtagtggtttctccggtcttgtttac 419
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 560 gtttaaattcactgccctagtagtaactcacaatgtagtggtttctctggtcttgtttac 619

                                                                       
Query: 420 cagacaatgtttgttacagcaaaaatttaaaagaaaaattcagggtgatttcaatgttgg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cagacaatgtttgttacagcaaaaatttaaaagaaaaattcagggtgatttcaatgttgg 679

                                                                       
Query: 480 cttctgttcatttgcaagtgtaatatagatctttatatatgattcatatatcaggatgca 539
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 680 cttctgttcatttgcaagtgtaatatagatctttatatatggttcatatatcaggatgca 739

                                                           
Query: 540 cttgactgtctataagtgctatactttagacacaggacttaaatagct 587
           |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 740 cttgactgtctagaagtgctatactttagacacaggacttaaatagct 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)