Query= MSMg01no339_c17.b1 MSMg01no339_c17.b1 CHROMAT_FILE:
MSMg01no339_c17.b1 PHD_FILE: MSMg01no339_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:57 2005
(617 letters)
>mm_chr3_52147005_52148021
Length = 1017
Score = 1162 bits (601), Expect = 0.0
Identities = 610/613 (99%)
Strand = Plus / Minus
Query: 5 gaattctggatgtctcacaatcctcagagcagaactatgcagagctatgcacctggcttc 64
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 817 gaattctggatgtctcacaatcctcagagcagagctatgcagagctatgcacctggcttc 758
Query: 65 tcaaatttttggccttctctgccaacctagtacaaggcttagttgcccaaatactctgtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tcaaatttttggccttctctgccaacctagtacaaggcttagttgcccaaatactctgtg 698
Query: 125 acccctgttggaccacaaaaggctctaactagatttgtggtcacccaaggaggcagccac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 acccctgttggaccacaaaaggctctaactagatttgtggtcacccaaggaggcagccac 638
Query: 185 agtgcccacatcctcatgttgttgacggcgactgaaggtgcttaaagtgccaaccgttct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 agtgcccacatcctcatgttgttgacggcgactgaaggtgcttaaagtgccaaccgttct 578
Query: 245 accagatcagaacaatatacagggccagacttctctgtgaccctgagcacattagtgcct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 accagatcagaacaatatacagggccagacttctctgtgaccctgagcacattagtgcct 518
Query: 305 tttctcaacaagagatggaaaacaaagtgagtgtaatggtaatctcacttagtaaaaaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tttctcaacaagagatggaaaacaaagtgagtgtaatggtaatctcacttagtaaaaaga 458
Query: 365 gacaaaagtcagacacagacctaagagagcttagaaacccttatttcaaaatgcattctg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gacaaaagtcagacacagacctaagagagcttagaaacccttatttcaaaatgcattctg 398
Query: 425 cactacattccacccaaggattgcaacacaacagctatgtgttaagtcctgcttccaggg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 397 cactacattccacccaaggattgcaacacaacagctatgtgttaagtcctgctgccaggg 338
Query: 485 tgcagagtgagggcggatcagacatggcccaacaggagctttctggttggatgccaggca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgcagagtgagggcggatcagacatggcccaacaggagctttctggttggatgccaggca 278
Query: 545 ggtatgtgggtatgtggcagtggtagtctctcctgaggcttcattctgttctttcactta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ggtatgtgggtatgtggcagtggtagtctctcctgaggcttcattctgttctttcactta 218
Query: 605 tgatctatctcag 617
||||||||||||
Sbjct: 217 cgatctatctcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_c17.g1 MSMg01no339_c17.g1 CHROMAT_FILE:
MSMg01no339_c17.g1 PHD_FILE: MSMg01no339_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:57 2005
(525 letters)
>mm_chr3_51996669_51997594
Length = 926
Score = 955 bits (494), Expect = 0.0
Identities = 518/526 (98%), Gaps = 1/526 (0%)
Strand = Plus / Plus
Query: 1 tccccagagaaggccttgtgggttgtggctagcttcactttccgttttcatctagatgcg 60
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 201 tccccagagaaggccttgtgggttgtggctagctttactttccattttcatctagatgct 260
Query: 61 ttctttaagggaagggttggttgctctctttcggagagtgttctatcatcacattaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctttaagggaagggttggttgctctctttcggagagtgttctatcatcacattaacaa 320
Query: 121 gaagataaacagacttgacaaaaatccatggaaaatagaagccccggcca-tgtacattc 179
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 321 gaagataaacagacttgacaaaaatccatggaaaacagaagccccggccactgtacattc 380
Query: 180 tagactgaggtattgcgtttgagcttgtggttagagaatagttgctgcagctgggtgttc 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tagactgaggtattgcgtttgagcttgtggttagagagtagttgctgcagctgggtgttc 440
Query: 240 tgtgtcacttgtacaccgtaaataaaatactctgggggcctaaaaatacaacagaaataa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtcacttgtacaccgtaaataaaatactctgggggcctaaaaatacaacagaaataa 500
Query: 300 aactttctgaaaaaaaaattaaaaagctgcaactttgtgtcatatcaaaaataagacatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactttctgaaaaaaaaattaaaaagctgcaactttgtgtcatatcaaaaataagacatg 560
Query: 360 gatttaaggggatcggcgtggtttttcagaggcagagtttccagacgagccaatcctagt 419
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 gatttaaggggatcggcgtggtttttcagaggcagagtttccaggcgagccaatcctagt 620
Query: 420 ccagccctgaatctggggggcatcagggtctgtaccagccgcagcttctagttaaggtac 479
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 ccagccctgaatctggggggcatcagggtctgtaccagccccagcttctagttaaggtac 680
Query: 480 catctgtgtgattagtgacaaaatatgagttaactgtactatttgg 525
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catctgtgtgattagtgacaaaatatgagttaactgtactatttgg 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 926
Length adjustment: 10
Effective length of query: 515
Effective length of database: 916
Effective search space: 471740
Effective search space used: 471740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
