BAC Information

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BAC

Clone NameMSMg01-339E10
Chromosome3 (Build37)
Map Location 33,167,473 - 33,167,918
singlet/doubletsinglet
Overlap genenone
Upstream geneZmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
Downstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339E10.T7 (MSMg01no339_e10.b1)MSMg01-339E10.TJ (MSMg01no339_e10.g1)
ACCAG453602AG453603
length747740
length of high quality
(start - end)		472 (74 - 545)446 (56 - 501)
definitionCHROMAT_FILE: MSMg01no339_e10.b1 PHD_FILE: MSMg01no339_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:04 2005CHROMAT_FILE: MSMg01no339_e10.g1 PHD_FILE: MSMg01no339_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCACCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCAACTGACGAATACTGAATGGCCGAGAATCATCTAAA
GAAATTTTCAACATTCTTAGTTGTCAGGGAAATGCAAATCAAAACAACTC
TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAATACTCAAGT
GACAACAGATGCTGGTGAGGATGTAGATAAAGAGGAACACTCCTCCATTG
CTGGCGGGATTGCAAGCTTGTACAACCACTATGGAAATCAGTTTGGCAGT
TCCTCAGAAAACTAGAAATAGTACTATTGGATGACCCAACTATACCACTC
CTGGGCATACACCCAGAAGATGCTCCAACATGTAATAAGGATACATGTTC
CACTATGTTCGTAGAAGCCTTATTTATAATAGCCAGAAGTGGAGAAGAAC
CCAGATGTCCCTCAACAGATTAATGGTTATAGAGAATGTGGTACATTAAT
ACAATGGAGTACTACACAGCTATTAAAAACAATGAATTTCTGAAATTCTT
AGGCAAATAGATGGAACTAACCCAATCACAAAAGAACACACATGATATAC
ATTCACTGATAAGTGAATATTAGCCCCGAAGCTCGGAATACTCAAGATAG
AATTCACAGACCCCTTGAAACTCATGAAAAAAGATGGCCCAACGTTTGTG
TACTTAAATCCTCAAAAGGGAAAAAAAAATCCCCTGGGGAGGAAAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGTCATAATATGCTGGCTATGAGTTCTTTGTTAAAACGCAAAAGA
TCGGGCTGCTTTTTGCTTAAGCCACTAATTAAAAGTGATTAATTTGTTAC
ATCAATTGAACTTCCAAGTAAAATCACGAAGACTTACATCAGACTTCTTC
AGCATAATTATAGGTGTCTGGAGATAGTAGTGTGAAAATTTTAAAATGTA
GAGCCGCACAAATATACTTGCCAGATAAAGGATTATTCAACAGTTAACAA
ATGATTTACTATTTATAAACATTAACTTAAGGAATTATGACAGAGAACAT
AAATGGGGACCAATTACTTAAGAGAAAAATAAATGAAATTTTGAAATTTT
TGGGCCAAATATAGGAAATATAGGAAAGAAAAATAGAGAAGATTCTGACC
AAAATAATATAGTAGAAATAAATACAAATATGTGTGTGATCAAATGGTAT
GTGGAGAATCAACTACTAATTCAAAGAAATAGTCTTAGATTTGAGGAAAA
AACAAAGTAAAACAGCATATAGACATGTTATAAAAGGACACTTCCATTAT
AATAATCTTAACCAACCATATTATGTACCACATTTTTTGGGAGAAAAATT
AAAATTCGGAGTAACTCTTAAAATTCCTTAAAAACCCACCTATAAATTTC
TCCCAATTTTTTTGGAAAATATTTTAATTTTAAAATTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_e10.g1 MSMg01no339_e10.g1 CHROMAT_FILE:
MSMg01no339_e10.g1 PHD_FILE: MSMg01no339_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:04 2005
         (446 letters)



>mm_chr3_33167273_33168118
          Length = 846

 Score =  862 bits (446), Expect = 0.0
 Identities = 446/446 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcataatatgctggctatgagttctttgttaaaacgcaaaagatcgggctgctttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcataatatgctggctatgagttctttgttaaaacgcaaaagatcgggctgctttttg 260

                                                                       
Query: 61  cttaagccactaattaaaagtgattaatttgttacatcaattgaacttccaagtaaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaagccactaattaaaagtgattaatttgttacatcaattgaacttccaagtaaaatc 320

                                                                       
Query: 121 acgaagacttacatcagacttcttcagcataattataggtgtctggagatagtagtgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgaagacttacatcagacttcttcagcataattataggtgtctggagatagtagtgtga 380

                                                                       
Query: 181 aaattttaaaatgtagagccgcacaaatatacttgccagataaaggattattcaacagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaattttaaaatgtagagccgcacaaatatacttgccagataaaggattattcaacagtt 440

                                                                       
Query: 241 aacaaatgatttactatttataaacattaacttaaggaattatgacagagaacataaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaaatgatttactatttataaacattaacttaaggaattatgacagagaacataaatg 500

                                                                       
Query: 301 gggaccaattacttaagagaaaaataaatgaaattttgaaatttttgggccaaatatagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggaccaattacttaagagaaaaataaatgaaattttgaaatttttgggccaaatatagg 560

                                                                       
Query: 361 aaatataggaaagaaaaatagagaagattctgaccaaaataatatagtagaaataaatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatataggaaagaaaaatagagaagattctgaccaaaataatatagtagaaataaatac 620

                                     
Query: 421 aaatatgtgtgtgatcaaatggtatg 446
           ||||||||||||||||||||||||||
Sbjct: 621 aaatatgtgtgtgatcaaatggtatg 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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