BAC Information

Click to search

BAC

Clone NameMSMg01-339F03
Chromosome3 (Build37)
Map Location 39,234,906 - 39,235,342
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4, LOC100041432
Downstream geneLOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339F03.T7 (MSMg01no339_f03.b1)MSMg01-339F03.TJ (MSMg01no339_f03.g1)
ACCAG453634AG453635
length741725
length of high quality
(start - end)
87 (52 - 138)434 (131 - 564)
definitionCHROMAT_FILE: MSMg01no339_f03.b1 PHD_FILE: MSMg01no339_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:07 2005CHROMAT_FILE: MSMg01no339_f03.g1 PHD_FILE: MSMg01no339_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTGTT
TGATTTTCTGAAGTCCACCTTCTTGAGTGCTTTATATATGTTGGATATTA
GTCCCCTATCTGATTTAGGATAGGGAAAGATCCTTTCACAATCTGTTGGC
GGTCTTTTTGTCTTATTGACGGTGTCTTTTGCTTTGCTGAAGCTTTGGAG
TGTCATGAGGACCCATTTGTCGATTCTCAGTCTTACAGGACAAGCTCATT
GATGTTCTATTCAGGAATGTTTCCCCTGTGACCAGTATCTTCCAGGCTTT
TCCTCACTTTCTCCTCGTATAAGTGTCAGTGCCTCTGGTTTTATGTTGAG
TTACTTGATCCACTTAGATTTGACCTTACTACATGGAGATAGGAATGGAT
CAATTCCCATTCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTG
ATGAGAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAA
GATCAAGTGACCATACGTGTATGGCGTCATTTCGGGGACTTCAATTCTAT
TCCATTGGACTACTTGGCTGGCACTATACCAGTACCATGCTAGTTTTATC
ACCATTGCTCTGTAGGAAAGCTTTAGGGCAGGCTTGGGGATTCCACCAGA
CATTCTATTATTCTTGGAGAGAGTTTTTGCCATCCTCGATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTATGTCCTCTGCTACAGACCCTGTTCC
CATGTTACTGCACCACAGGTAATGGCAGGCAAAACCCGAGGATTAGTACC
CCAGAGGATTTATGGCATCCAGACCTAGAGGTGACCACAAATGCTTGGCA
ATCCTATGAGATTTTTCTCCTCTGGCATATCTCCCATTCTCTCCACAATG
GCTGCAGCTCTTCAGTTCCATCTAATCCCCAGCTCTGGGAGAGTTCTTCG
CCCACCATCAATTTTCCCTTCTTATCCTGACTTTTAAGACTGCACAGCCA
CACCCTTACTCACTGAACAGCACGCATGGTGAAGATTTAATAGACACACC
TTTGCTTTGCTCCTACATACAGATGAGCACAGAGATCCTTAAGAACAAAT
GCTTTGGTGTCCATATGTACACGTGCATATGACTTTAGAGAATCACCAAA
AATCTCTCCAAATTAACAATTTGTTTTGCCTTTTCTTGTACAGTTGATTT
TTTTTTTACCTGAGATGTTTTAGTAGATTGTGGAAAATACTAANATGATC
AATATTTATATTGCAACACACACATATGTGTAATTGAGGAGCTGGAAAGG
TGGCTCAAATGTTAAAAGTTTATATTTATTTCTCTTGAACAAGGCCCTAG
GTGGGTTTTTTTTTACTTTCCTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_f03.g1 MSMg01no339_f03.g1 CHROMAT_FILE:
MSMg01no339_f03.g1 PHD_FILE: MSMg01no339_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:07 2005
         (434 letters)



>mm_chr3_39234706_39235539
          Length = 834

 Score =  830 bits (429), Expect = 0.0
 Identities = 434/437 (99%), Gaps = 3/437 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacccgaggattagtaccccagaggatttatggcatccagacctagaggtgaccacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacccgaggattagtaccccagaggatttatggcatccagacctagaggtgaccacaa 260

                                                                       
Query: 61  atgcttggcaatcctatgagatttttctcctctggcatatctcccattctctccacaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcttggcaatcctatgagatttttctcctctggcatatctcccattctctccacaatg 320

                                                                       
Query: 121 gctgcagctcttcagttccatctaatccccagctctgggagagttcttcgcccaccatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgcagctcttcagttccatctaatccccagctctgggagagttcttcgcccaccatca 380

                                                                       
Query: 181 attttcccttcttatcctgacttttaagactgcacagccacacccttactcactgaacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttcccttcttatcctgacttttaagactgcacagccacacccttactcactgaacag 440

                                                                       
Query: 241 cacgcatggtgaagatttaatagacacacctttgctttgctcctacatacagatgagcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacgcatggtgaagatttaatagacacacctttgctttgctcctacatacagatgagcac 500

                                                                       
Query: 301 agagatccttaagaacaaatgctttggtgtccatatgtacacgtgcatatgactttagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagatccttaagaacaaatgctttggtgtccatatgtacacgtgcatatgactttagag 560

                                                                       
Query: 361 aatcaccaaaaatctctccaaattaacaatttgttttgccttttcttgtacagttgattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatcaccaaaaatctctccaaattaacaatttgttttgccttttcttgtacagttgattt 620

                            
Query: 421 ttttttt---acctgag 434
           |||||||   |||||||
Sbjct: 621 ttttttttttacctgag 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)