NCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCN
GGATTTCCTTGTTGCCANAAAGACAAATCAGAGGTGGAAGTTGAATGTGA
AATCCTCTTCCTTTTGGCCAGATTCTGGATTCCATTTTTTGGCTCAGAAA
GTAAGCTCATTGTTTTCAGAGATAGCCAGGCTAGTTGTGGTGTCTTCTTA
GAAAACATTATCCACATTGCTGTGTGAGTTTCTGCTAAGCAAAATAGGAA
ATTGTGGCAATTCCTTAAATTGCGCAGGACACGTGAAACTGACCTGAAAA
ACTATAATAAATTAAAGAAATTTAAGATAGGATATACACAGGCCACTGAG
CAACAGCTTCCCCTACTCCATGAAATGGTCACATTTAGCTTGGCTGGATG
TGGTCATAGGCCCTGATGATTTCAACAGCAGGTTATTCTTTATTCTGTGA
CATCTTAATGGATCAGAAAGTTATTATGGAATAACACAAAATGTAATTAT
ATAAAACACTATGTTCCGAGTGGAAAATTTGAGCTGAGAAATAGTTCAGT
TGTTCAGAGAACTTGCTATCTTCCAGTGGATGCAGGTTAGTTCCCAGTGC
CAACATCAAGTAGCTCGCAATAGGCTTATAACTTCAGCTTCAGGGGATCC
AAGACGCTCTTCTGGTCTCTGTGGGCACCTGCATGAACATAGAATTTACT
TCCTTAGCTTACTCTTATCCCCAATTAATTAAAAGCTTGGGGN

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTAAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
CGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTATATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACGCAATATGTACTCACTGATAAGTG
GATATTAACCCCAAACCTAGGATACCCAAATATAAGATAAAAATTTCTTA
ACCCTTGGAACTCCCGAAAAAAGAAGACTGGAATGGGGGACACTATGCCC
CCCCCCN

Query= MSMg01no339_f22.b1 MSMg01no339_f22.b1 CHROMAT_FILE:
MSMg01no339_f22.b1 PHD_FILE: MSMg01no339_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:11 2005
         (452 letters)



>mm_chr3_115229629_115230480
          Length = 852

 Score =  851 bits (440), Expect = 0.0
 Identities = 449/452 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagatagccaggctagttgtggtgtcttcttagaaaacattatccacattgctgtgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agagatagccaggctagttgtggtgtcttcttagaaaacattatccacattgctgtgtga 504

                                                                       
Query: 61  gtttctgctaagcaaaataggaaattgtggcaattccttaaattgcgcaggacacgtgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtttctgctaagcaaaataggaaattgtggcaattccttaaattgcgcaggacacgtgaa 444

                                                                       
Query: 121 actgacctgaaaaactataataaattaaagaaatttaagataggatatacacaggccact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 actgacctgaaaaactataataaattaaagaaatttaagataggatatacacaggccact 384

                                                                       
Query: 181 gagcaacagcttcccctactccatgaaatggtcacatttagcttggctggatgtggtcat 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gagcaaccgcttcccctactccatgaaatggtcacatttagcttggctggatgtggtcat 324

                                                                       
Query: 241 aggccctgatgatttcaacagcaggttattctttattctgtgacatcttaatggatcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggccctgatgatttcaacagcaggttattctttattctgtgacatcttaatggatcaga 264

                                                                       
Query: 301 aagttattatggaataacacaaaatgtaattatataaaacactatgttccgagtggaaaa 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagctattatggaataacacaaaatgtaattatataaaacactatgttccgagtggaaaa 204

                                                                       
Query: 361 tttgagctgagaaatagttcagttgttcagagaacttgctatcttccagtggatgcaggt 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tttgagctgagaaatagttgagttgttcagagaacttgctatcttccagtggatgcaggt 144

                                           
Query: 421 tagttcccagtgccaacatcaagtagctcgca 452
           ||||||||||||||||||||||||||||||||
Sbjct: 143 tagttcccagtgccaacatcaagtagctcgca 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)