Query= MSMg01no339_h11.b1 MSMg01no339_h11.b1 CHROMAT_FILE:
MSMg01no339_h11.b1 PHD_FILE: MSMg01no339_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:18 2005
(661 letters)
>mm_chr3_25982772_25983832
Length = 1061
Score = 1224 bits (633), Expect = 0.0
Identities = 651/657 (99%)
Strand = Plus / Plus
Query: 5 gaattcttttgcttacattattatcttcatttcacaaaagagaaatataaatctcagagc 64
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttgcagagattattatcttcatttcacaaaagagaaatataaatctcagagc 264
Query: 65 aattaggaagccttatgtactgtgtgggtgatagaaaggacctgttgaaatataaaagat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattaggaagccttatgtactgtgtgggtgatagaaaggacctgttgaaatataaaagat 324
Query: 125 aataaagacctattatcttcacttatattttaaaatctaccaggtgtatttcttttaaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aataaagacctattatcttcacttatattttaaaatctaccaggtgtatttcttttaaat 384
Query: 185 aattcttatgtacttccaacttcatttctgtattgtgcaatgtgtttgtgtaataaaacc 244
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattcttatgcacttccaacttcatttctgtattgtgcaatgtgtttgtgtaataaaacc 444
Query: 245 tttccaatttaaggttaaaaccaacatctcttgactgaagttaagtgaaccatcgactcg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttccaatttaaggttaaaaccaacatctcttgactgaagttaagtgaaccatcgactcg 504
Query: 305 ttttacacctacttcatttcacagctacaattatattttctcagcctagaaaatcaaaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttacacctacttcatttcacagctacaattatattttctcagcctagaaaatcaaaac 564
Query: 365 agagctatgggcaagctttgtcacctctctgactgtaaaagtaataatctaaaaaacaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agagctatgggcaagctttgtcacctctctgactgtaaaagtaataatctaaaaaacaca 624
Query: 425 gtctcttatctattcactgattaaaataaacagtatttgtcaaaaagaagtggcagaagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtctcttatctattcactgattaaaataaacagtatttgtcaaaaagaagtggcagaagg 684
Query: 485 ccaaagttttatattgggtgaaaaaagaatcatgtcacaagttttcaacccaatgggatg 544
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 685 ccaaagttttatattgggtgaaaaaagaatcgtgtcacaagttttcaacccaatgggatg 744
Query: 545 tttagaaggcagatgtcgcttctgtcatatggacctcacttgcagtgagtgacttaacac 604
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttagaaggcagatgttgcttctgtcatatggacctcacttgcagtgagtgacttaacac 804
Query: 605 aaagcctcacatctttcttccccaaatgttacaaggtaaagaactaaatacctctgg 661
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaagcctcacatctttcttccccaaatgttacaaggtaaagaactaaatacctctgg 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_h11.g1 MSMg01no339_h11.g1 CHROMAT_FILE:
MSMg01no339_h11.g1 PHD_FILE: MSMg01no339_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:18 2005
(547 letters)
>mm_chr3_26120377_26121321
Length = 945
Score = 988 bits (511), Expect = 0.0
Identities = 536/545 (98%), Gaps = 4/545 (0%)
Strand = Plus / Minus
Query: 1 attctgaataaaggatagtaaatgggttgaagaagacaatggtatcgaagcagcgtatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 742 attctgaataaaggatagtaaatgggttgaagaagacaatggtatcgaagcagagtatcc 683
Query: 61 agacttgatttctggctcttttgttcaacacagcatttgaaaatgcaggtaatttattcc 120
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 682 agacttgatttcttgctcttttgttcaacacaccatttgaaaatgcaggtaatttattcc 623
Query: 121 accataggtcagtttactcaggtctaaaagagggcgtcactggtacttcatgctgcctca 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 622 accataggtcagtttactcaggtctaaaagagggcgtcaatggtacttcatgctgcctca 563
Query: 181 ttgattaaatgaaaaagcagatatacattgagaggtacatatcagtaactaataaactgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttgattaaatgaaaaagcagatatacattgagaggtacatatcagtaactaataaactgc 503
Query: 241 agtgatagaattagtgtgttgtaaaattctgtcttcaggacaactggaacgctagtgttt 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 502 agtgatagaattagtgtgttgtaaaattctgtcttcaggacaactggaatgctagtgttt 443
Query: 301 tttccaatacggaagaactactttagtgctcttttgtctacttttagtggctcacacatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tttccaatacggaagaactactttagtgctcttttgtctacttttagtggctcacacatc 383
Query: 361 actactgaaagagtatttgtaaccttagttctattttgctttggccttttttcccctctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 382 actactgaaagagtatttgtaaccttagttctattttgctttggccttttt--ccctctt 325
Query: 421 cttgtacttttggtggaagtatttagttttatggttggcacttcttgtatgatcaatgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttgtacttttggtggaagtatttagttttatggttggcacttcttgtatgatcaatgaa 265
Query: 481 ttatattcctttcataatcat-tgcatatcatgaataatgatatggtactaattatgatt 539
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttatattcctttcataatcatct-catatcatgaataatgatatggtactaattatgatt 206
Query: 540 ttttt 544
|||||
Sbjct: 205 ttttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 945
Length adjustment: 10
Effective length of query: 537
Effective length of database: 935
Effective search space: 502095
Effective search space used: 502095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
