Query= MSMg01no339_k02.b1 MSMg01no339_k02.b1 CHROMAT_FILE:
MSMg01no339_k02.b1 PHD_FILE: MSMg01no339_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:31 2005
(573 letters)
>mm_chr3_35427352_35428324
Length = 973
Score = 797 bits (412), Expect = 0.0
Identities = 501/546 (91%), Gaps = 29/546 (5%)
Strand = Plus / Minus
Query: 33 gcttagtacaaaatggagactatatatataagatggagtccttgtggctaaggaggcctg 92
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 973 gcttagtacaaaatggagactatatatataagatggagtccttgtggcta---aggtctg 917
Query: 93 caacaagctaagcaggtggagttgccctggggagatggaaaaggacagaatagggcagtt 152
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 916 caacaagctaagcaggtggagttgccctggggagatgaaaaaggacagaacagggcagtt 857
Query: 153 cagacagaaggagcagtggggaaaggtgtaaggttggatgctagagaggacatttggagg 212
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 856 cagacagaaggagcagtggggaaaggcgtaaggttggatgctagagaggacatttggagg 797
Query: 213 acatgctcctactggatgccttggttaatatagtatgtagaatagaccttctatgttact 272
||||||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct: 796 acatgctcctactagatgccttggttaatatagtatgtagagtaga----------ta-- 749
Query: 273 gaactatgatctgatactggaatatctatacaggaagggctctctgctgcttttcttttc 332
|| ||||||| |||||| |||||| ||||||||||||||| |||||||||||||||
Sbjct: 748 -aa----gatctgagactggactatctacacaggaagggctctccgctgcttttcttttc 694
Query: 333 ttttcccgaagagattttccatttaaatttctacccatgtgtatagatagtgcattaatt 392
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ttttcctggagagattttccatttaaatttctacccatgtgtatagatagtgcattaatt 634
Query: 393 ggctttgcctgtgaactactttgctggaccctaactcatgacccttctgttgtggcagac 452
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 633 ggctttgcctgtgaactactttgctgggccctaactcatgaccctcctgttgtggcagac 574
Query: 453 atcatttgccaatgagccatgtttctgtcggctcttctctagctgctcagcccagaacca 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 atcatttgccaatgagccatgtttctgtcggctcttctctagctgctcagcccagaacca 514
Query: 513 ccatgtgagagactgtggccccaggtacccccct-----tttgttaaaaagtggtcttgg 567
|||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 513 ccatgtgagagactgtggccccaggtacccccctggggggtgg----aaagtggtcttgg 458
Query: 568 gcaccc 573
||||||
Sbjct: 457 gcaccc 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_k02.g1 MSMg01no339_k02.g1 CHROMAT_FILE:
MSMg01no339_k02.g1 PHD_FILE: MSMg01no339_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:31 2005
(553 letters)
>mm_chr3_35257258_35258210
Length = 953
Score = 1019 bits (527), Expect = 0.0
Identities = 542/547 (99%)
Strand = Plus / Plus
Query: 7 atctaaatctcctgtaagaacaggctataagactgatagcgcacccagaagctcaccaga 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 atctaaatctcctgtaagaacaggctataagactgatagcgcacccagaagctcaccaga 266
Query: 67 cgggcatgggagaagtgtttctgagttgtatcatctctgagcttgagaagtcacactggt 126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgggcatgggagaagtgtttctgagttgtatcatctctgagcttgagaagtcacactggt 326
Query: 127 gagggtgggagccagtggagcaagttcgtcatgctgtttcccacaggagcagggctgtat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gagggtgggagccagtggagcaagttcgtcatgctgtttcccacaggagcagggctgtat 386
Query: 187 ccctcactgggttgctgcaggattagcattggaaggtgctcctacatcagcagcagaggc 246
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccctcgctgggttgctgcaggattagcattggaaggtgctcctacatcagcagcagaggc 446
Query: 247 ttagcctgacatccttgccaagggggagcacaaccatgttaaactcttatgagtgtttac 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttagcctgacatccttgccaagggggagcacaaccatgttaaactcttatgagtgtttac 506
Query: 307 agctccagagagcatgaatgcaaaacagaggcacgaaagagaggcccatgtgcttgttca 366
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 507 agctccagagagcgtgaatgcaaaacagaggcacgaaagagaggcccacgtgcttgttca 566
Query: 367 tttactccaacttacagtcaatagaccaggcaaacaaagagaattgaggacatagattta 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tttactccaacttacagtcaatagaccaggcaaacaaagagaattgaggacatagattta 626
Query: 427 cagcactaacaacgagcctgacaaaaaccatataaacaccgcattcaatgacttctcaga 486
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cagcactaacaacgagcctgataaaaaccatataaacaccgcattcaatgacttctcaga 686
Query: 487 ttaataaagacatgcaaaaaattaaacagccatctagccagcctagtaaacctcacagac 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttaataaagacatgcaaaaaattaaacagccatctagccagcctagtaaacctcacagac 746
Query: 547 actcctc 553
|||||||
Sbjct: 747 actcctc 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
