Query= MSMg01no340_h22.b1 MSMg01no340_h22.b1 CHROMAT_FILE:
MSMg01no340_h22.b1 PHD_FILE: MSMg01no340_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:31 2005
(409 letters)
>mm_chr3_30019403_30020211
Length = 809
Score = 762 bits (394), Expect = 0.0
Identities = 400/402 (99%)
Strand = Plus / Minus
Query: 5 gaattcccatttactggccccttatgagtcagtttctctggtgcatgatcttcgtgctgg 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaattcccatttacgggccccttatgagtcagtttctctggtgcatgatcttcgtgctgg 547
Query: 65 ctgtctctctggaagtgtgtcatcacgttcttcgtgtttgctcagctccagctttgctgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ctgtctctctggaagtgtgtcatcacgttcttcgtgtttgctcagctccagctttgctgc 487
Query: 125 acaaggactttcttttccagagaatcagtatccctgcctcgtgaaaatccggaaatggct 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 486 acaaggactttcttttccagagaatcagtatccctgcctcgtgaaaatctggaaatggct 427
Query: 185 ctaggcctgctctgcaagtactaggatgctgggaagtcacagatcctggcctcaatctct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctaggcctgctctgcaagtactaggatgctgggaagtcacagatcctggcctcaatctct 367
Query: 245 acatcagcaaaatcatgacaagtgggtaccagaaagtgggagcacgaaatctagatacac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acatcagcaaaatcatgacaagtgggtaccagaaagtgggagcacgaaatctagatacac 307
Query: 305 tctcccatctttcctgcctgttcatcatttctcattactgaattactgccacatagaccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tctcccatctttcctgcctgttcatcatttctcattactgaattactgccacatagaccc 247
Query: 365 ccttgctctactgtgtatgatggggggagagagggagggagg 406
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ccttgctctactgtgtatgatggggggagagagggagggagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_h22.g1 MSMg01no340_h22.g1 CHROMAT_FILE:
MSMg01no340_h22.g1 PHD_FILE: MSMg01no340_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:31 2005
(480 letters)
>mm_chr3_29837463_29838345
Length = 883
Score = 880 bits (455), Expect = 0.0
Identities = 475/483 (98%), Gaps = 3/483 (0%)
Strand = Plus / Plus
Query: 1 tctttacaacccaggaaagttttgaacatgcaaagcccctgcattagcctcctacatagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttacaacccaggaaagttttgaacatgcaaagcccctgcattagcctcctacatagc 260
Query: 61 taggattattgacgtagactgccaggccagcccagtctctattaacattctgtgtaacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggattattgacgtagactgccaggccagcccagtctctattaacattctgtgtaacct 320
Query: 121 ggggtaagtctcctcagatcttcctttcatcctcccagaatgcattgtttttctccccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggtaagtctcctcagatcttcctttcatcctcccagaatgcattgtttttctccccaa 380
Query: 181 ccagattg---agaagtttaggaacaaaaataatcgaatctgatatgctggtggaagatg 237
|| ||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 ccggattgagaagaagtttacgaacaaaaataatcgaatctgatatgctggtgcaagatg 440
Query: 238 taaccccagcatttgttggaggccaaggtccaagagttcagtttcaaccatggctatgca 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaccccagcatttgttggaggccaaggtccaagagttcagtttcaaccatggctatgca 500
Query: 298 gagactgtgtctcagaaacctcagactggggtagcagtgcagtggtggggaattgtctcg 357
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagactttgtctcagaaacctcagactggggtagcagtgcagtggtggggaattgtctcg 560
Query: 358 accaacctgccaaaagctttggaatcaaactccagggcagaggagaaaagtctgccatgt 417
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accaacctgccaaaagttttggaatcaaactccagggcagaggagaaaagtctgccatgt 620
Query: 418 tttaatggctgtaatcaaatatataactctcatttccaacaggatgaattgattctctgt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttaatggctgtaatcaaatatataactctcatttccaacaggatgaattgattctctgt 680
Query: 478 ctg 480
|||
Sbjct: 681 ctg 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 883
Length adjustment: 10
Effective length of query: 470
Effective length of database: 873
Effective search space: 410310
Effective search space used: 410310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
